Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS10210 and AZOBR_RS10215 are separated by 100 nucleotides AZOBR_RS10215 and AZOBR_RS10220 are separated by 132 nucleotides AZOBR_RS10220 and AZOBR_RS10225 are separated by 421 nucleotides
AZOBR_RS10210: AZOBR_RS10210 - membrane protein, at 2,132,269 to 2,133,483
_RS10210
AZOBR_RS10215: AZOBR_RS10215 - acireductone dioxygenase, at 2,133,584 to 2,134,147
_RS10215
AZOBR_RS10220: AZOBR_RS10220 - hypothetical protein, at 2,134,280 to 2,135,104
_RS10220
AZOBR_RS10225: AZOBR_RS10225 - diaminopimelate decarboxylase, at 2,135,526 to 2,136,800
_RS10225
Position (kb)
2134
2135
2136 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2133.332 kb on - strand, within AZOBR_RS10210 at 2133.332 kb on - strand, within AZOBR_RS10210 at 2133.332 kb on - strand, within AZOBR_RS10210 at 2133.343 kb on + strand, within AZOBR_RS10210 at 2133.343 kb on + strand, within AZOBR_RS10210 at 2133.346 kb on + strand, within AZOBR_RS10210 at 2133.346 kb on + strand, within AZOBR_RS10210 at 2133.347 kb on - strand, within AZOBR_RS10210 at 2133.347 kb on - strand, within AZOBR_RS10210 at 2133.347 kb on - strand, within AZOBR_RS10210 at 2133.347 kb on - strand, within AZOBR_RS10210 at 2133.391 kb on + strand at 2133.392 kb on - strand at 2133.509 kb on + strand at 2133.602 kb on + strand at 2133.602 kb on + strand at 2133.602 kb on + strand at 2133.988 kb on - strand, within AZOBR_RS10215 at 2134.143 kb on + strand at 2134.144 kb on - strand at 2134.220 kb on - strand at 2134.556 kb on + strand, within AZOBR_RS10220 at 2134.556 kb on + strand, within AZOBR_RS10220 at 2134.556 kb on + strand, within AZOBR_RS10220 at 2134.557 kb on - strand, within AZOBR_RS10220 at 2134.557 kb on - strand, within AZOBR_RS10220 at 2134.557 kb on - strand, within AZOBR_RS10220 at 2134.655 kb on + strand, within AZOBR_RS10220 at 2134.656 kb on - strand, within AZOBR_RS10220 at 2134.656 kb on - strand, within AZOBR_RS10220 at 2134.656 kb on - strand, within AZOBR_RS10220 at 2134.656 kb on - strand, within AZOBR_RS10220 at 2134.792 kb on + strand, within AZOBR_RS10220 at 2135.242 kb on + strand at 2135.243 kb on - strand at 2135.757 kb on + strand, within AZOBR_RS10225 at 2135.889 kb on + strand, within AZOBR_RS10225 at 2135.889 kb on + strand, within AZOBR_RS10225 at 2135.889 kb on + strand, within AZOBR_RS10225 at 2135.889 kb on + strand, within AZOBR_RS10225 at 2135.889 kb on + strand, within AZOBR_RS10225 at 2135.890 kb on - strand, within AZOBR_RS10225 at 2135.890 kb on - strand, within AZOBR_RS10225 at 2135.890 kb on - strand, within AZOBR_RS10225 at 2135.890 kb on - strand, within AZOBR_RS10225 at 2135.890 kb on - strand, within AZOBR_RS10225 at 2135.890 kb on - strand, within AZOBR_RS10225 at 2135.941 kb on - strand, within AZOBR_RS10225 at 2136.064 kb on - strand, within AZOBR_RS10225 at 2136.064 kb on - strand, within AZOBR_RS10225
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,133,332 - AZOBR_RS10210 0.87 -1.4 2,133,332 - AZOBR_RS10210 0.87 +0.3 2,133,332 - AZOBR_RS10210 0.87 +1.6 2,133,343 + AZOBR_RS10210 0.88 -0.6 2,133,343 + AZOBR_RS10210 0.88 -1.5 2,133,346 + AZOBR_RS10210 0.89 -0.5 2,133,346 + AZOBR_RS10210 0.89 -3.0 2,133,347 - AZOBR_RS10210 0.89 +0.1 2,133,347 - AZOBR_RS10210 0.89 -3.3 2,133,347 - AZOBR_RS10210 0.89 +0.6 2,133,347 - AZOBR_RS10210 0.89 -2.4 2,133,391 + -1.0 2,133,392 - +0.9 2,133,509 + -1.2 2,133,602 + -1.5 2,133,602 + -0.1 2,133,602 + +0.6 2,133,988 - AZOBR_RS10215 0.72 -1.1 2,134,143 + -1.9 2,134,144 - +0.8 2,134,220 - +1.2 2,134,556 + AZOBR_RS10220 0.33 +2.3 2,134,556 + AZOBR_RS10220 0.33 +0.9 2,134,556 + AZOBR_RS10220 0.33 +0.8 2,134,557 - AZOBR_RS10220 0.34 +0.0 2,134,557 - AZOBR_RS10220 0.34 +0.4 2,134,557 - AZOBR_RS10220 0.34 -0.5 2,134,655 + AZOBR_RS10220 0.45 +0.2 2,134,656 - AZOBR_RS10220 0.46 -0.1 2,134,656 - AZOBR_RS10220 0.46 -0.5 2,134,656 - AZOBR_RS10220 0.46 +0.2 2,134,656 - AZOBR_RS10220 0.46 -1.0 2,134,792 + AZOBR_RS10220 0.62 -0.3 2,135,242 + +1.1 2,135,243 - +2.5 2,135,757 + AZOBR_RS10225 0.18 -0.8 2,135,889 + AZOBR_RS10225 0.28 -0.7 2,135,889 + AZOBR_RS10225 0.28 +0.8 2,135,889 + AZOBR_RS10225 0.28 -0.7 2,135,889 + AZOBR_RS10225 0.28 -0.7 2,135,889 + AZOBR_RS10225 0.28 +0.6 2,135,890 - AZOBR_RS10225 0.29 +1.0 2,135,890 - AZOBR_RS10225 0.29 -0.6 2,135,890 - AZOBR_RS10225 0.29 -1.2 2,135,890 - AZOBR_RS10225 0.29 +2.7 2,135,890 - AZOBR_RS10225 0.29 -0.1 2,135,890 - AZOBR_RS10225 0.29 +1.3 2,135,941 - AZOBR_RS10225 0.33 -1.9 2,136,064 - AZOBR_RS10225 0.42 +2.3 2,136,064 - AZOBR_RS10225 0.42 -2.6
Or see this region's nucleotide sequence