Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS09940 and AZOBR_RS09945 are separated by 109 nucleotides AZOBR_RS09945 and AZOBR_RS09950 are separated by 109 nucleotides AZOBR_RS09950 and AZOBR_RS09955 are separated by 107 nucleotides
AZOBR_RS09940: AZOBR_RS09940 - 5'-methylthioadenosine phosphorylase, at 2,087,326 to 2,088,210
_RS09940
AZOBR_RS09945: AZOBR_RS09945 - hypothetical protein, at 2,088,320 to 2,088,733
_RS09945
AZOBR_RS09950: AZOBR_RS09950 - pseudouridine-5'-phosphate glycosidase, at 2,088,843 to 2,089,763
_RS09950
AZOBR_RS09955: AZOBR_RS09955 - beta-lactamase, at 2,089,871 to 2,090,899
_RS09955
Position (kb)
2088
2089
2090 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2088.348 kb on + strand at 2088.813 kb on + strand at 2088.821 kb on - strand at 2088.835 kb on - strand at 2088.863 kb on - strand at 2089.193 kb on - strand, within AZOBR_RS09950 at 2089.451 kb on + strand, within AZOBR_RS09950 at 2089.517 kb on + strand, within AZOBR_RS09950 at 2089.517 kb on + strand, within AZOBR_RS09950 at 2089.518 kb on - strand, within AZOBR_RS09950 at 2089.859 kb on - strand at 2089.859 kb on - strand at 2089.859 kb on - strand at 2089.861 kb on - strand at 2089.937 kb on + strand at 2089.959 kb on - strand at 2089.959 kb on - strand at 2090.121 kb on - strand, within AZOBR_RS09955 at 2090.241 kb on - strand, within AZOBR_RS09955 at 2090.418 kb on - strand, within AZOBR_RS09955 at 2090.484 kb on - strand, within AZOBR_RS09955 at 2090.484 kb on - strand, within AZOBR_RS09955 at 2090.519 kb on + strand, within AZOBR_RS09955 at 2090.520 kb on - strand, within AZOBR_RS09955 at 2090.520 kb on - strand, within AZOBR_RS09955 at 2090.520 kb on - strand, within AZOBR_RS09955 at 2090.520 kb on - strand, within AZOBR_RS09955 at 2090.520 kb on - strand, within AZOBR_RS09955
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,088,348 + +1.1 2,088,813 + +1.0 2,088,821 - +0.9 2,088,835 - +0.8 2,088,863 - +0.6 2,089,193 - AZOBR_RS09950 0.38 +0.3 2,089,451 + AZOBR_RS09950 0.66 +0.6 2,089,517 + AZOBR_RS09950 0.73 +1.7 2,089,517 + AZOBR_RS09950 0.73 -3.2 2,089,518 - AZOBR_RS09950 0.73 -2.9 2,089,859 - +0.5 2,089,859 - +0.4 2,089,859 - +0.1 2,089,861 - +0.3 2,089,937 + -3.6 2,089,959 - +0.4 2,089,959 - -5.5 2,090,121 - AZOBR_RS09955 0.24 +1.2 2,090,241 - AZOBR_RS09955 0.36 -0.5 2,090,418 - AZOBR_RS09955 0.53 -2.3 2,090,484 - AZOBR_RS09955 0.60 -0.8 2,090,484 - AZOBR_RS09955 0.60 +0.8 2,090,519 + AZOBR_RS09955 0.63 +0.5 2,090,520 - AZOBR_RS09955 0.63 -0.4 2,090,520 - AZOBR_RS09955 0.63 +0.4 2,090,520 - AZOBR_RS09955 0.63 -0.3 2,090,520 - AZOBR_RS09955 0.63 -1.5 2,090,520 - AZOBR_RS09955 0.63 -0.5
Or see this region's nucleotide sequence