Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS09800 and AZOBR_RS09805 are separated by 6 nucleotides AZOBR_RS09805 and AZOBR_RS09810 overlap by 1 nucleotides AZOBR_RS09810 and AZOBR_RS09815 are separated by 163 nucleotides AZOBR_RS09815 and AZOBR_RS09820 are separated by 31 nucleotides
AZOBR_RS09800: AZOBR_RS09800 - hypothetical protein, at 2,056,152 to 2,056,484
_RS09800
AZOBR_RS09805: AZOBR_RS09805 - peptide chain release factor I, at 2,056,491 to 2,056,910
_RS09805
AZOBR_RS09810: AZOBR_RS09810 - DSBA oxidoreductase, at 2,056,910 to 2,057,563
_RS09810
AZOBR_RS09815: AZOBR_RS09815 - hypothetical protein, at 2,057,727 to 2,058,185
_RS09815
AZOBR_RS09820: AZOBR_RS09820 - hypothetical protein, at 2,058,217 to 2,058,609
_RS09820
Position (kb)
2056
2057
2058 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2056.018 kb on + strand at 2056.019 kb on - strand at 2056.040 kb on + strand at 2056.046 kb on + strand at 2056.047 kb on - strand at 2056.047 kb on - strand at 2056.225 kb on - strand, within AZOBR_RS09800 at 2056.363 kb on - strand, within AZOBR_RS09800 at 2056.363 kb on - strand, within AZOBR_RS09800 at 2056.482 kb on + strand at 2056.483 kb on - strand at 2056.679 kb on - strand, within AZOBR_RS09805 at 2057.022 kb on + strand, within AZOBR_RS09810 at 2057.397 kb on + strand, within AZOBR_RS09810 at 2057.520 kb on + strand at 2057.520 kb on + strand at 2057.520 kb on + strand at 2057.520 kb on + strand at 2057.521 kb on - strand at 2057.521 kb on - strand at 2057.521 kb on - strand at 2057.564 kb on - strand at 2057.564 kb on - strand at 2057.572 kb on + strand at 2058.366 kb on - strand, within AZOBR_RS09820 at 2058.371 kb on + strand, within AZOBR_RS09820 at 2058.371 kb on + strand, within AZOBR_RS09820 at 2058.371 kb on + strand, within AZOBR_RS09820 at 2058.372 kb on - strand, within AZOBR_RS09820 at 2058.393 kb on - strand, within AZOBR_RS09820 at 2058.410 kb on + strand, within AZOBR_RS09820 at 2058.411 kb on - strand, within AZOBR_RS09820 at 2058.411 kb on - strand, within AZOBR_RS09820
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,056,018 + +1.3 2,056,019 - +2.4 2,056,040 + +0.7 2,056,046 + +1.2 2,056,047 - +1.1 2,056,047 - -1.6 2,056,225 - AZOBR_RS09800 0.22 +2.1 2,056,363 - AZOBR_RS09800 0.63 -0.0 2,056,363 - AZOBR_RS09800 0.63 +0.1 2,056,482 + -0.4 2,056,483 - +0.1 2,056,679 - AZOBR_RS09805 0.45 -1.8 2,057,022 + AZOBR_RS09810 0.17 +1.1 2,057,397 + AZOBR_RS09810 0.74 +0.6 2,057,520 + +0.7 2,057,520 + -0.3 2,057,520 + +0.2 2,057,520 + -0.7 2,057,521 - -3.4 2,057,521 - +0.4 2,057,521 - -0.3 2,057,564 - -1.0 2,057,564 - -0.1 2,057,572 + -0.1 2,058,366 - AZOBR_RS09820 0.38 +0.8 2,058,371 + AZOBR_RS09820 0.39 -0.6 2,058,371 + AZOBR_RS09820 0.39 +0.0 2,058,371 + AZOBR_RS09820 0.39 -0.2 2,058,372 - AZOBR_RS09820 0.39 -1.5 2,058,393 - AZOBR_RS09820 0.45 +0.1 2,058,410 + AZOBR_RS09820 0.49 +0.4 2,058,411 - AZOBR_RS09820 0.49 -0.2 2,058,411 - AZOBR_RS09820 0.49 +1.0
Or see this region's nucleotide sequence