Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS09715 and AZOBR_RS09720 are separated by 128 nucleotides AZOBR_RS09720 and AZOBR_RS09725 are separated by 139 nucleotides AZOBR_RS09725 and AZOBR_RS09730 are separated by 141 nucleotides
AZOBR_RS09715: AZOBR_RS09715 - pantoate--beta-alanine ligase, at 2,034,619 to 2,035,485
_RS09715
AZOBR_RS09720: AZOBR_RS09720 - succinate-semialdehyde dehdyrogenase, at 2,035,614 to 2,037,107
_RS09720
AZOBR_RS09725: AZOBR_RS09725 - hypothetical protein, at 2,037,247 to 2,037,699
_RS09725
AZOBR_RS09730: AZOBR_RS09730 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 2,037,841 to 2,039,226
_RS09730
Position (kb)
2035
2036
2037
2038 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2034.910 kb on + strand, within AZOBR_RS09715 at 2034.911 kb on - strand, within AZOBR_RS09715 at 2034.934 kb on + strand, within AZOBR_RS09715 at 2034.935 kb on - strand, within AZOBR_RS09715 at 2035.207 kb on + strand, within AZOBR_RS09715 at 2035.208 kb on - strand, within AZOBR_RS09715 at 2035.357 kb on + strand, within AZOBR_RS09715 at 2035.559 kb on + strand at 2035.559 kb on + strand at 2035.559 kb on + strand at 2035.559 kb on + strand at 2035.560 kb on - strand at 2035.560 kb on - strand at 2035.560 kb on - strand at 2035.560 kb on - strand at 2035.560 kb on - strand at 2035.561 kb on + strand at 2035.561 kb on + strand at 2035.561 kb on + strand at 2035.562 kb on - strand at 2035.562 kb on - strand at 2035.620 kb on + strand at 2035.978 kb on - strand, within AZOBR_RS09720 at 2036.491 kb on - strand, within AZOBR_RS09720 at 2036.551 kb on - strand, within AZOBR_RS09720 at 2036.648 kb on + strand, within AZOBR_RS09720 at 2036.898 kb on + strand, within AZOBR_RS09720 at 2036.899 kb on - strand, within AZOBR_RS09720 at 2036.904 kb on + strand, within AZOBR_RS09720 at 2036.904 kb on + strand, within AZOBR_RS09720 at 2036.905 kb on - strand, within AZOBR_RS09720 at 2036.953 kb on - strand, within AZOBR_RS09720 at 2037.200 kb on - strand at 2037.200 kb on - strand at 2037.409 kb on + strand, within AZOBR_RS09725 at 2037.409 kb on + strand, within AZOBR_RS09725 at 2037.410 kb on - strand, within AZOBR_RS09725 at 2037.410 kb on - strand, within AZOBR_RS09725 at 2037.842 kb on + strand at 2037.842 kb on + strand at 2037.843 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,034,910 + AZOBR_RS09715 0.34 +1.0 2,034,911 - AZOBR_RS09715 0.34 -1.2 2,034,934 + AZOBR_RS09715 0.36 -1.2 2,034,935 - AZOBR_RS09715 0.36 +1.1 2,035,207 + AZOBR_RS09715 0.68 +0.8 2,035,208 - AZOBR_RS09715 0.68 +0.4 2,035,357 + AZOBR_RS09715 0.85 +3.4 2,035,559 + +1.2 2,035,559 + +2.2 2,035,559 + -0.9 2,035,559 + +0.4 2,035,560 - -0.8 2,035,560 - -0.6 2,035,560 - -3.2 2,035,560 - -2.2 2,035,560 - -0.3 2,035,561 + +0.7 2,035,561 + +0.3 2,035,561 + +0.8 2,035,562 - -1.4 2,035,562 - -3.0 2,035,620 + -0.1 2,035,978 - AZOBR_RS09720 0.24 -0.1 2,036,491 - AZOBR_RS09720 0.59 -0.7 2,036,551 - AZOBR_RS09720 0.63 +0.1 2,036,648 + AZOBR_RS09720 0.69 +1.1 2,036,898 + AZOBR_RS09720 0.86 -1.6 2,036,899 - AZOBR_RS09720 0.86 +0.7 2,036,904 + AZOBR_RS09720 0.86 +0.1 2,036,904 + AZOBR_RS09720 0.86 +1.8 2,036,905 - AZOBR_RS09720 0.86 -0.2 2,036,953 - AZOBR_RS09720 0.90 +1.4 2,037,200 - +0.1 2,037,200 - -2.6 2,037,409 + AZOBR_RS09725 0.36 -0.2 2,037,409 + AZOBR_RS09725 0.36 +0.9 2,037,410 - AZOBR_RS09725 0.36 +0.0 2,037,410 - AZOBR_RS09725 0.36 -4.0 2,037,842 + +1.0 2,037,842 + -0.1 2,037,843 - -0.4
Or see this region's nucleotide sequence