Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS09695 and AZOBR_RS09700 are separated by 267 nucleotides AZOBR_RS09700 and AZOBR_RS09705 are separated by 132 nucleotides AZOBR_RS09705 and AZOBR_RS09710 are separated by 231 nucleotides AZOBR_RS09710 and AZOBR_RS09715 are separated by 187 nucleotides
AZOBR_RS09695: AZOBR_RS09695 - hypothetical protein, at 2,032,752 to 2,033,486
_RS09695
AZOBR_RS09700: AZOBR_RS09700 - tRNA-Val, at 2,033,754 to 2,033,828
_RS09700
AZOBR_RS09705: AZOBR_RS09705 - tRNA-Val, at 2,033,961 to 2,034,035
_RS09705
AZOBR_RS09710: AZOBR_RS09710 - sugar tyrosine-protein kinase, at 2,034,267 to 2,034,431
_RS09710
AZOBR_RS09715: AZOBR_RS09715 - pantoate--beta-alanine ligase, at 2,034,619 to 2,035,485
_RS09715
Position (kb)
2034
2035 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2033.443 kb on + strand at 2033.633 kb on + strand at 2033.803 kb on - strand, within AZOBR_RS09700 at 2033.803 kb on - strand, within AZOBR_RS09700 at 2033.816 kb on - strand, within AZOBR_RS09700 at 2033.865 kb on + strand at 2034.136 kb on + strand at 2034.200 kb on - strand at 2034.275 kb on + strand at 2034.571 kb on + strand at 2034.571 kb on + strand at 2034.910 kb on + strand, within AZOBR_RS09715 at 2034.911 kb on - strand, within AZOBR_RS09715 at 2034.934 kb on + strand, within AZOBR_RS09715 at 2034.935 kb on - strand, within AZOBR_RS09715 at 2035.207 kb on + strand, within AZOBR_RS09715 at 2035.208 kb on - strand, within AZOBR_RS09715 at 2035.357 kb on + strand, within AZOBR_RS09715
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,033,443 + +0.3 2,033,633 + +3.5 2,033,803 - AZOBR_RS09700 0.65 -0.6 2,033,803 - AZOBR_RS09700 0.65 -0.4 2,033,816 - AZOBR_RS09700 0.83 -3.0 2,033,865 + -0.2 2,034,136 + +1.4 2,034,200 - -1.2 2,034,275 + +0.8 2,034,571 + +0.9 2,034,571 + +1.3 2,034,910 + AZOBR_RS09715 0.34 +1.0 2,034,911 - AZOBR_RS09715 0.34 -1.2 2,034,934 + AZOBR_RS09715 0.36 -1.2 2,034,935 - AZOBR_RS09715 0.36 +1.1 2,035,207 + AZOBR_RS09715 0.68 +0.8 2,035,208 - AZOBR_RS09715 0.68 +0.4 2,035,357 + AZOBR_RS09715 0.85 +3.4
Or see this region's nucleotide sequence