Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08985

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08975 and AZOBR_RS08980 overlap by 29 nucleotidesAZOBR_RS08980 and AZOBR_RS08985 are separated by 244 nucleotidesAZOBR_RS08985 and AZOBR_RS08990 are separated by 123 nucleotides AZOBR_RS08975: AZOBR_RS08975 - hypothetical protein, at 1,877,652 to 1,878,452 _RS08975 AZOBR_RS08980: AZOBR_RS08980 - hypothetical protein, at 1,878,424 to 1,878,714 _RS08980 AZOBR_RS08985: AZOBR_RS08985 - 5S ribosomal RNA, at 1,878,959 to 1,879,074 _RS08985 AZOBR_RS08990: AZOBR_RS08990 - 23S ribosomal RNA, at 1,879,198 to 1,881,950 _RS08990 Position (kb) 1878 1879 1880Strain fitness (log2 ratio) -1 0 1at 1878.248 kb on + strand, within AZOBR_RS08975at 1878.512 kb on + strand, within AZOBR_RS08980at 1878.512 kb on + strand, within AZOBR_RS08980at 1878.513 kb on - strand, within AZOBR_RS08980at 1878.715 kb on - strandat 1878.761 kb on - strandat 1878.761 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,878,248 + AZOBR_RS08975 0.74 +0.6
1,878,512 + AZOBR_RS08980 0.30 +0.2
1,878,512 + AZOBR_RS08980 0.30 -0.7
1,878,513 - AZOBR_RS08980 0.31 +0.8
1,878,715 - -0.8
1,878,761 - +0.3
1,878,761 - +0.4

Or see this region's nucleotide sequence