Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08825 and AZOBR_RS08830 are separated by 400 nucleotides AZOBR_RS08830 and AZOBR_RS08835 overlap by 4 nucleotides AZOBR_RS08835 and AZOBR_RS08840 overlap by 4 nucleotides
AZOBR_RS08825: AZOBR_RS08825 - agmatine deiminase, at 1,846,299 to 1,847,315
_RS08825
AZOBR_RS08830: AZOBR_RS08830 - putrescine/spermidine ABC transporter permease, at 1,847,716 to 1,848,549
_RS08830
AZOBR_RS08835: AZOBR_RS08835 - putrescine/spermidine ABC transporter permease, at 1,848,546 to 1,849,469
_RS08835
AZOBR_RS08840: AZOBR_RS08840 - ABC transporter ATP-binding protein, at 1,849,466 to 1,850,629
_RS08840
Position (kb)
1847
1848
1849 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1846.963 kb on + strand, within AZOBR_RS08825 at 1847.573 kb on + strand at 1847.682 kb on + strand at 1848.104 kb on + strand, within AZOBR_RS08830 at 1848.104 kb on + strand, within AZOBR_RS08830 at 1848.105 kb on - strand, within AZOBR_RS08830 at 1848.105 kb on - strand, within AZOBR_RS08830 at 1848.105 kb on - strand, within AZOBR_RS08830 at 1848.105 kb on - strand, within AZOBR_RS08830 at 1848.468 kb on - strand at 1848.494 kb on + strand at 1848.494 kb on + strand at 1848.495 kb on - strand at 1848.495 kb on - strand at 1848.506 kb on + strand at 1848.916 kb on + strand, within AZOBR_RS08835 at 1848.917 kb on - strand, within AZOBR_RS08835 at 1848.917 kb on - strand, within AZOBR_RS08835 at 1848.917 kb on - strand at 1848.922 kb on + strand, within AZOBR_RS08835 at 1848.922 kb on + strand, within AZOBR_RS08835 at 1848.922 kb on + strand, within AZOBR_RS08835 at 1848.922 kb on + strand, within AZOBR_RS08835 at 1848.922 kb on + strand, within AZOBR_RS08835 at 1848.922 kb on + strand, within AZOBR_RS08835 at 1848.922 kb on + strand, within AZOBR_RS08835 at 1848.923 kb on - strand, within AZOBR_RS08835 at 1848.923 kb on - strand, within AZOBR_RS08835 at 1848.923 kb on - strand, within AZOBR_RS08835 at 1848.923 kb on - strand, within AZOBR_RS08835 at 1849.045 kb on + strand, within AZOBR_RS08835 at 1849.046 kb on - strand, within AZOBR_RS08835 at 1849.136 kb on - strand, within AZOBR_RS08835 at 1849.216 kb on + strand, within AZOBR_RS08835 at 1849.216 kb on + strand, within AZOBR_RS08835 at 1849.216 kb on + strand, within AZOBR_RS08835 at 1849.216 kb on + strand, within AZOBR_RS08835 at 1849.216 kb on + strand, within AZOBR_RS08835 at 1849.217 kb on - strand, within AZOBR_RS08835 at 1849.243 kb on + strand, within AZOBR_RS08835
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,846,963 + AZOBR_RS08825 0.65 +1.6 1,847,573 + +1.2 1,847,682 + +0.6 1,848,104 + AZOBR_RS08830 0.47 -3.8 1,848,104 + AZOBR_RS08830 0.47 -1.1 1,848,105 - AZOBR_RS08830 0.47 +1.2 1,848,105 - AZOBR_RS08830 0.47 -2.2 1,848,105 - AZOBR_RS08830 0.47 -0.2 1,848,105 - AZOBR_RS08830 0.47 -2.0 1,848,468 - +0.1 1,848,494 + -1.5 1,848,494 + -0.8 1,848,495 - -1.7 1,848,495 - +0.6 1,848,506 + +0.5 1,848,916 + AZOBR_RS08835 0.40 +1.3 1,848,917 - AZOBR_RS08835 0.40 +0.3 1,848,917 - AZOBR_RS08835 0.40 +3.8 1,848,917 - -0.8 1,848,922 + AZOBR_RS08835 0.41 -0.1 1,848,922 + AZOBR_RS08835 0.41 +0.3 1,848,922 + AZOBR_RS08835 0.41 +0.2 1,848,922 + AZOBR_RS08835 0.41 -0.3 1,848,922 + AZOBR_RS08835 0.41 +0.0 1,848,922 + AZOBR_RS08835 0.41 +0.9 1,848,922 + AZOBR_RS08835 0.41 -2.5 1,848,923 - AZOBR_RS08835 0.41 +0.2 1,848,923 - AZOBR_RS08835 0.41 -0.4 1,848,923 - AZOBR_RS08835 0.41 +1.7 1,848,923 - AZOBR_RS08835 0.41 +1.1 1,849,045 + AZOBR_RS08835 0.54 +1.1 1,849,046 - AZOBR_RS08835 0.54 +1.3 1,849,136 - AZOBR_RS08835 0.64 +0.6 1,849,216 + AZOBR_RS08835 0.73 -2.0 1,849,216 + AZOBR_RS08835 0.73 +0.8 1,849,216 + AZOBR_RS08835 0.73 -2.4 1,849,216 + AZOBR_RS08835 0.73 +1.2 1,849,216 + AZOBR_RS08835 0.73 +0.8 1,849,217 - AZOBR_RS08835 0.73 +1.9 1,849,243 + AZOBR_RS08835 0.75 +0.8
Or see this region's nucleotide sequence