Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08815 and AZOBR_RS08820 are separated by 158 nucleotides AZOBR_RS08820 and AZOBR_RS08825 are separated by 147 nucleotides AZOBR_RS08825 and AZOBR_RS08830 are separated by 400 nucleotides
AZOBR_RS08815: AZOBR_RS08815 - protein phosphatase, at 1,844,944 to 1,845,723
_RS08815
AZOBR_RS08820: AZOBR_RS08820 - hypothetical protein, at 1,845,882 to 1,846,151
_RS08820
AZOBR_RS08825: AZOBR_RS08825 - agmatine deiminase, at 1,846,299 to 1,847,315
_RS08825
AZOBR_RS08830: AZOBR_RS08830 - putrescine/spermidine ABC transporter permease, at 1,847,716 to 1,848,549
_RS08830
Position (kb)
1846
1847
1848 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1845.824 kb on + strand at 1845.825 kb on - strand at 1846.161 kb on - strand at 1846.174 kb on - strand at 1846.243 kb on - strand at 1846.474 kb on + strand, within AZOBR_RS08825 at 1846.487 kb on - strand, within AZOBR_RS08825 at 1846.963 kb on + strand, within AZOBR_RS08825 at 1847.573 kb on + strand at 1847.682 kb on + strand at 1848.104 kb on + strand, within AZOBR_RS08830 at 1848.104 kb on + strand, within AZOBR_RS08830 at 1848.105 kb on - strand, within AZOBR_RS08830 at 1848.105 kb on - strand, within AZOBR_RS08830 at 1848.105 kb on - strand, within AZOBR_RS08830 at 1848.105 kb on - strand, within AZOBR_RS08830
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,845,824 + +1.0 1,845,825 - +0.1 1,846,161 - +1.8 1,846,174 - +1.1 1,846,243 - +0.0 1,846,474 + AZOBR_RS08825 0.17 -0.3 1,846,487 - AZOBR_RS08825 0.18 -0.8 1,846,963 + AZOBR_RS08825 0.65 +1.6 1,847,573 + +1.2 1,847,682 + +0.6 1,848,104 + AZOBR_RS08830 0.47 -3.8 1,848,104 + AZOBR_RS08830 0.47 -1.1 1,848,105 - AZOBR_RS08830 0.47 +1.2 1,848,105 - AZOBR_RS08830 0.47 -2.2 1,848,105 - AZOBR_RS08830 0.47 -0.2 1,848,105 - AZOBR_RS08830 0.47 -2.0
Or see this region's nucleotide sequence