Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08810 and AZOBR_RS08815 are separated by 24 nucleotides AZOBR_RS08815 and AZOBR_RS08820 are separated by 158 nucleotides AZOBR_RS08820 and AZOBR_RS08825 are separated by 147 nucleotides
AZOBR_RS08810: AZOBR_RS08810 - hypothetical protein, at 1,844,245 to 1,844,919
_RS08810
AZOBR_RS08815: AZOBR_RS08815 - protein phosphatase, at 1,844,944 to 1,845,723
_RS08815
AZOBR_RS08820: AZOBR_RS08820 - hypothetical protein, at 1,845,882 to 1,846,151
_RS08820
AZOBR_RS08825: AZOBR_RS08825 - agmatine deiminase, at 1,846,299 to 1,847,315
_RS08825
Position (kb)
1844
1845
1846 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1844.021 kb on + strand at 1844.025 kb on + strand at 1844.025 kb on + strand at 1844.025 kb on + strand at 1844.026 kb on - strand at 1844.026 kb on - strand at 1844.039 kb on + strand at 1844.614 kb on + strand, within AZOBR_RS08810 at 1844.749 kb on + strand, within AZOBR_RS08810 at 1844.833 kb on + strand, within AZOBR_RS08810 at 1844.834 kb on - strand, within AZOBR_RS08810 at 1844.941 kb on + strand at 1844.941 kb on + strand at 1844.941 kb on + strand at 1844.942 kb on - strand at 1845.824 kb on + strand at 1845.825 kb on - strand at 1846.161 kb on - strand at 1846.174 kb on - strand at 1846.243 kb on - strand at 1846.474 kb on + strand, within AZOBR_RS08825 at 1846.487 kb on - strand, within AZOBR_RS08825
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,844,021 + +0.2 1,844,025 + -2.4 1,844,025 + -0.4 1,844,025 + +0.3 1,844,026 - -0.8 1,844,026 - -5.7 1,844,039 + +1.2 1,844,614 + AZOBR_RS08810 0.55 -0.9 1,844,749 + AZOBR_RS08810 0.75 +0.3 1,844,833 + AZOBR_RS08810 0.87 -4.0 1,844,834 - AZOBR_RS08810 0.87 +0.6 1,844,941 + +0.1 1,844,941 + +0.3 1,844,941 + -3.4 1,844,942 - +1.5 1,845,824 + +1.0 1,845,825 - +0.1 1,846,161 - +1.8 1,846,174 - +1.1 1,846,243 - +0.0 1,846,474 + AZOBR_RS08825 0.17 -0.3 1,846,487 - AZOBR_RS08825 0.18 -0.8
Or see this region's nucleotide sequence