Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08465 and AZOBR_RS08470 are separated by 331 nucleotides AZOBR_RS08470 and AZOBR_RS08475 overlap by 8 nucleotides AZOBR_RS08475 and AZOBR_RS08480 are separated by 43 nucleotides
AZOBR_RS08465: AZOBR_RS08465 - MarR family transcriptional regulator, at 1,777,632 to 1,778,105
_RS08465
AZOBR_RS08470: AZOBR_RS08470 - amino acid ABC transporter ATP-binding protein, at 1,778,437 to 1,779,192
_RS08470
AZOBR_RS08475: AZOBR_RS08475 - histidinol dehydrogenase, at 1,779,185 to 1,779,907
_RS08475
AZOBR_RS08480: AZOBR_RS08480 - ABC transporter permease, at 1,779,951 to 1,781,165
_RS08480
Position (kb)
1778
1779
1780 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1777.481 kb on - strand at 1777.503 kb on + strand at 1777.531 kb on + strand at 1777.573 kb on - strand at 1777.645 kb on - strand at 1777.645 kb on - strand at 1777.647 kb on + strand at 1777.648 kb on - strand at 1777.725 kb on - strand, within AZOBR_RS08465 at 1777.762 kb on - strand, within AZOBR_RS08465 at 1777.815 kb on + strand, within AZOBR_RS08465 at 1777.815 kb on + strand, within AZOBR_RS08465 at 1777.816 kb on - strand, within AZOBR_RS08465 at 1777.866 kb on + strand, within AZOBR_RS08465 at 1778.073 kb on + strand at 1778.073 kb on + strand at 1778.074 kb on - strand at 1778.259 kb on + strand at 1778.260 kb on - strand at 1778.260 kb on - strand at 1778.436 kb on + strand at 1778.437 kb on - strand at 1778.890 kb on + strand, within AZOBR_RS08470 at 1778.891 kb on - strand, within AZOBR_RS08470 at 1778.891 kb on - strand, within AZOBR_RS08470 at 1779.169 kb on + strand at 1779.169 kb on + strand at 1779.169 kb on + strand at 1779.169 kb on + strand at 1779.169 kb on + strand at 1779.170 kb on - strand at 1779.170 kb on - strand at 1779.170 kb on - strand at 1779.170 kb on - strand at 1779.170 kb on - strand at 1779.172 kb on - strand at 1779.172 kb on - strand at 1779.172 kb on - strand at 1779.246 kb on - strand at 1779.452 kb on + strand, within AZOBR_RS08475 at 1779.452 kb on + strand, within AZOBR_RS08475 at 1779.452 kb on + strand, within AZOBR_RS08475 at 1779.452 kb on + strand, within AZOBR_RS08475 at 1779.452 kb on + strand, within AZOBR_RS08475 at 1779.554 kb on + strand, within AZOBR_RS08475 at 1779.554 kb on + strand, within AZOBR_RS08475 at 1779.555 kb on - strand, within AZOBR_RS08475 at 1779.815 kb on + strand, within AZOBR_RS08475 at 1779.815 kb on + strand, within AZOBR_RS08475 at 1779.816 kb on - strand, within AZOBR_RS08475 at 1779.816 kb on - strand, within AZOBR_RS08475 at 1779.893 kb on + strand at 1779.894 kb on - strand at 1779.894 kb on - strand at 1780.077 kb on + strand, within AZOBR_RS08480
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,777,481 - -3.3 1,777,503 + +0.5 1,777,531 + +0.5 1,777,573 - -3.3 1,777,645 - -0.4 1,777,645 - +1.1 1,777,647 + -1.5 1,777,648 - -0.5 1,777,725 - AZOBR_RS08465 0.20 -1.3 1,777,762 - AZOBR_RS08465 0.27 -2.4 1,777,815 + AZOBR_RS08465 0.39 -0.7 1,777,815 + AZOBR_RS08465 0.39 -0.4 1,777,816 - AZOBR_RS08465 0.39 +0.5 1,777,866 + AZOBR_RS08465 0.49 -3.4 1,778,073 + -0.9 1,778,073 + +0.1 1,778,074 - +1.6 1,778,259 + +0.4 1,778,260 - +0.6 1,778,260 - +0.4 1,778,436 + +0.9 1,778,437 - +0.2 1,778,890 + AZOBR_RS08470 0.60 -0.2 1,778,891 - AZOBR_RS08470 0.60 -0.7 1,778,891 - AZOBR_RS08470 0.60 -3.2 1,779,169 + -0.4 1,779,169 + -2.6 1,779,169 + +0.1 1,779,169 + -0.2 1,779,169 + -1.7 1,779,170 - +0.6 1,779,170 - -1.7 1,779,170 - +1.2 1,779,170 - -0.2 1,779,170 - +0.9 1,779,172 - +0.3 1,779,172 - -2.3 1,779,172 - -0.2 1,779,246 - -0.0 1,779,452 + AZOBR_RS08475 0.37 +1.6 1,779,452 + AZOBR_RS08475 0.37 -0.2 1,779,452 + AZOBR_RS08475 0.37 -0.2 1,779,452 + AZOBR_RS08475 0.37 -0.1 1,779,452 + AZOBR_RS08475 0.37 -0.7 1,779,554 + AZOBR_RS08475 0.51 +0.4 1,779,554 + AZOBR_RS08475 0.51 +0.7 1,779,555 - AZOBR_RS08475 0.51 +1.3 1,779,815 + AZOBR_RS08475 0.87 +0.3 1,779,815 + AZOBR_RS08475 0.87 +0.2 1,779,816 - AZOBR_RS08475 0.87 +0.2 1,779,816 - AZOBR_RS08475 0.87 -0.8 1,779,893 + -1.6 1,779,894 - -0.2 1,779,894 - -0.8 1,780,077 + AZOBR_RS08480 0.10 -1.5
Or see this region's nucleotide sequence