Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08085

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08075 and AZOBR_RS08080 overlap by 4 nucleotidesAZOBR_RS08080 and AZOBR_RS08085 are separated by 49 nucleotidesAZOBR_RS08085 and AZOBR_RS08090 overlap by 4 nucleotidesAZOBR_RS08090 and AZOBR_RS08095 are separated by 100 nucleotides AZOBR_RS08075: AZOBR_RS08075 - glutamate racemase, at 1,703,674 to 1,704,525 _RS08075 AZOBR_RS08080: AZOBR_RS08080 - urease accessory protein UreE, at 1,704,522 to 1,705,103 _RS08080 AZOBR_RS08085: AZOBR_RS08085 - urease accessory protein UreF, at 1,705,153 to 1,705,902 _RS08085 AZOBR_RS08090: AZOBR_RS08090 - urease accessory protein UreG, at 1,705,899 to 1,706,537 _RS08090 AZOBR_RS08095: AZOBR_RS08095 - hypothetical protein, at 1,706,638 to 1,707,510 _RS08095 Position (kb) 1705 1706Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1704.214 kb on + strand, within AZOBR_RS08075at 1704.215 kb on - strand, within AZOBR_RS08075at 1704.376 kb on + strand, within AZOBR_RS08075at 1704.377 kb on - strand, within AZOBR_RS08075at 1704.732 kb on + strand, within AZOBR_RS08080at 1704.961 kb on - strand, within AZOBR_RS08080at 1705.282 kb on + strand, within AZOBR_RS08085at 1705.879 kb on + strandat 1705.879 kb on + strandat 1705.880 kb on - strandat 1706.046 kb on + strand, within AZOBR_RS08090at 1706.046 kb on + strand, within AZOBR_RS08090at 1706.046 kb on + strand, within AZOBR_RS08090at 1706.046 kb on + strand, within AZOBR_RS08090at 1706.047 kb on - strand, within AZOBR_RS08090at 1706.047 kb on - strand, within AZOBR_RS08090at 1706.047 kb on - strand, within AZOBR_RS08090at 1706.047 kb on - strand, within AZOBR_RS08090at 1706.283 kb on + strand, within AZOBR_RS08090at 1706.283 kb on + strand, within AZOBR_RS08090at 1706.284 kb on - strand, within AZOBR_RS08090

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,704,214 + AZOBR_RS08075 0.63 -4.0
1,704,215 - AZOBR_RS08075 0.63 +1.3
1,704,376 + AZOBR_RS08075 0.82 -2.8
1,704,377 - AZOBR_RS08075 0.83 -2.3
1,704,732 + AZOBR_RS08080 0.36 +0.8
1,704,961 - AZOBR_RS08080 0.75 +0.4
1,705,282 + AZOBR_RS08085 0.17 +0.4
1,705,879 + -0.1
1,705,879 + +1.1
1,705,880 - -0.2
1,706,046 + AZOBR_RS08090 0.23 +1.9
1,706,046 + AZOBR_RS08090 0.23 +0.6
1,706,046 + AZOBR_RS08090 0.23 +0.3
1,706,046 + AZOBR_RS08090 0.23 +0.6
1,706,047 - AZOBR_RS08090 0.23 -3.1
1,706,047 - AZOBR_RS08090 0.23 +0.5
1,706,047 - AZOBR_RS08090 0.23 +0.5
1,706,047 - AZOBR_RS08090 0.23 +0.6
1,706,283 + AZOBR_RS08090 0.60 +1.5
1,706,283 + AZOBR_RS08090 0.60 -1.2
1,706,284 - AZOBR_RS08090 0.60 -2.3

Or see this region's nucleotide sequence