Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08070

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08055 and AZOBR_RS08060 are separated by 100 nucleotidesAZOBR_RS08060 and AZOBR_RS08065 are separated by 11 nucleotidesAZOBR_RS08065 and AZOBR_RS08070 are separated by 26 nucleotidesAZOBR_RS08070 and AZOBR_RS08075 are separated by 18 nucleotidesAZOBR_RS08075 and AZOBR_RS08080 overlap by 4 nucleotides AZOBR_RS08055: AZOBR_RS08055 - urease accessory protein, at 1,700,372 to 1,701,199 _RS08055 AZOBR_RS08060: AZOBR_RS08060 - urease subunit gamma, at 1,701,300 to 1,701,602 _RS08060 AZOBR_RS08065: AZOBR_RS08065 - urease subunit beta, at 1,701,614 to 1,701,919 _RS08065 AZOBR_RS08070: AZOBR_RS08070 - urease subunit alpha, at 1,701,946 to 1,703,655 _RS08070 AZOBR_RS08075: AZOBR_RS08075 - glutamate racemase, at 1,703,674 to 1,704,525 _RS08075 AZOBR_RS08080: AZOBR_RS08080 - urease accessory protein UreE, at 1,704,522 to 1,705,103 _RS08080 Position (kb) 1701 1702 1703 1704Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1700.975 kb on + strand, within AZOBR_RS08055at 1700.975 kb on + strand, within AZOBR_RS08055at 1700.975 kb on + strand, within AZOBR_RS08055at 1700.975 kb on + strand, within AZOBR_RS08055at 1701.122 kb on + strandat 1701.260 kb on + strandat 1701.261 kb on - strandat 1701.424 kb on - strand, within AZOBR_RS08060at 1701.424 kb on - strand, within AZOBR_RS08060at 1701.732 kb on - strand, within AZOBR_RS08065at 1701.732 kb on - strand, within AZOBR_RS08065at 1701.864 kb on - strand, within AZOBR_RS08065at 1701.864 kb on - strand, within AZOBR_RS08065at 1701.986 kb on - strandat 1703.159 kb on - strand, within AZOBR_RS08070at 1703.159 kb on - strand, within AZOBR_RS08070at 1703.170 kb on + strand, within AZOBR_RS08070at 1703.170 kb on + strand, within AZOBR_RS08070at 1703.369 kb on - strand, within AZOBR_RS08070at 1703.390 kb on - strand, within AZOBR_RS08070at 1703.573 kb on - strandat 1703.641 kb on + strandat 1703.641 kb on + strandat 1703.642 kb on - strandat 1703.759 kb on - strandat 1703.785 kb on + strand, within AZOBR_RS08075at 1703.786 kb on - strand, within AZOBR_RS08075at 1703.786 kb on - strand, within AZOBR_RS08075at 1703.812 kb on + strand, within AZOBR_RS08075at 1703.812 kb on + strand, within AZOBR_RS08075at 1703.812 kb on + strand, within AZOBR_RS08075at 1703.812 kb on + strand, within AZOBR_RS08075at 1703.812 kb on + strand, within AZOBR_RS08075at 1703.813 kb on - strand, within AZOBR_RS08075at 1704.214 kb on + strand, within AZOBR_RS08075at 1704.215 kb on - strand, within AZOBR_RS08075at 1704.376 kb on + strand, within AZOBR_RS08075at 1704.377 kb on - strand, within AZOBR_RS08075

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,700,975 + AZOBR_RS08055 0.73 -0.7
1,700,975 + AZOBR_RS08055 0.73 -2.5
1,700,975 + AZOBR_RS08055 0.73 -0.4
1,700,975 + AZOBR_RS08055 0.73 +0.4
1,701,122 + +1.3
1,701,260 + +0.4
1,701,261 - -0.6
1,701,424 - AZOBR_RS08060 0.41 +0.3
1,701,424 - AZOBR_RS08060 0.41 -1.0
1,701,732 - AZOBR_RS08065 0.39 +0.5
1,701,732 - AZOBR_RS08065 0.39 +1.1
1,701,864 - AZOBR_RS08065 0.82 -3.4
1,701,864 - AZOBR_RS08065 0.82 -2.5
1,701,986 - +0.4
1,703,159 - AZOBR_RS08070 0.71 +0.9
1,703,159 - AZOBR_RS08070 0.71 +1.4
1,703,170 + AZOBR_RS08070 0.72 +0.7
1,703,170 + AZOBR_RS08070 0.72 +0.8
1,703,369 - AZOBR_RS08070 0.83 +1.2
1,703,390 - AZOBR_RS08070 0.84 -2.9
1,703,573 - +0.8
1,703,641 + -1.1
1,703,641 + +0.1
1,703,642 - -0.3
1,703,759 - -0.5
1,703,785 + AZOBR_RS08075 0.13 -1.5
1,703,786 - AZOBR_RS08075 0.13 +1.1
1,703,786 - AZOBR_RS08075 0.13 +0.7
1,703,812 + AZOBR_RS08075 0.16 -0.6
1,703,812 + AZOBR_RS08075 0.16 +0.8
1,703,812 + AZOBR_RS08075 0.16 +0.4
1,703,812 + AZOBR_RS08075 0.16 +0.8
1,703,812 + AZOBR_RS08075 0.16 +1.6
1,703,813 - AZOBR_RS08075 0.16 -0.6
1,704,214 + AZOBR_RS08075 0.63 -4.0
1,704,215 - AZOBR_RS08075 0.63 +1.3
1,704,376 + AZOBR_RS08075 0.82 -2.8
1,704,377 - AZOBR_RS08075 0.83 -2.3

Or see this region's nucleotide sequence