Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08065

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08055 and AZOBR_RS08060 are separated by 100 nucleotidesAZOBR_RS08060 and AZOBR_RS08065 are separated by 11 nucleotidesAZOBR_RS08065 and AZOBR_RS08070 are separated by 26 nucleotides AZOBR_RS08055: AZOBR_RS08055 - urease accessory protein, at 1,700,372 to 1,701,199 _RS08055 AZOBR_RS08060: AZOBR_RS08060 - urease subunit gamma, at 1,701,300 to 1,701,602 _RS08060 AZOBR_RS08065: AZOBR_RS08065 - urease subunit beta, at 1,701,614 to 1,701,919 _RS08065 AZOBR_RS08070: AZOBR_RS08070 - urease subunit alpha, at 1,701,946 to 1,703,655 _RS08070 Position (kb) 1701 1702Strain fitness (log2 ratio) -3 -2 -1 0 1at 1700.975 kb on + strand, within AZOBR_RS08055at 1700.975 kb on + strand, within AZOBR_RS08055at 1700.975 kb on + strand, within AZOBR_RS08055at 1700.975 kb on + strand, within AZOBR_RS08055at 1701.122 kb on + strandat 1701.260 kb on + strandat 1701.261 kb on - strandat 1701.424 kb on - strand, within AZOBR_RS08060at 1701.424 kb on - strand, within AZOBR_RS08060at 1701.732 kb on - strand, within AZOBR_RS08065at 1701.732 kb on - strand, within AZOBR_RS08065at 1701.864 kb on - strand, within AZOBR_RS08065at 1701.864 kb on - strand, within AZOBR_RS08065at 1701.986 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,700,975 + AZOBR_RS08055 0.73 -0.7
1,700,975 + AZOBR_RS08055 0.73 -2.5
1,700,975 + AZOBR_RS08055 0.73 -0.4
1,700,975 + AZOBR_RS08055 0.73 +0.4
1,701,122 + +1.3
1,701,260 + +0.4
1,701,261 - -0.6
1,701,424 - AZOBR_RS08060 0.41 +0.3
1,701,424 - AZOBR_RS08060 0.41 -1.0
1,701,732 - AZOBR_RS08065 0.39 +0.5
1,701,732 - AZOBR_RS08065 0.39 +1.1
1,701,864 - AZOBR_RS08065 0.82 -3.4
1,701,864 - AZOBR_RS08065 0.82 -2.5
1,701,986 - +0.4

Or see this region's nucleotide sequence