Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS07050 and AZOBR_RS07055 are separated by 180 nucleotides AZOBR_RS07055 and AZOBR_RS07060 are separated by 144 nucleotides AZOBR_RS07060 and AZOBR_RS07065 are separated by 416 nucleotides
AZOBR_RS07050: AZOBR_RS07050 - transcriptional regulator, at 1,491,933 to 1,493,327
_RS07050
AZOBR_RS07055: AZOBR_RS07055 - hypothetical protein, at 1,493,508 to 1,493,720
_RS07055
AZOBR_RS07060: AZOBR_RS07060 - hypothetical protein, at 1,493,865 to 1,494,188
_RS07060
AZOBR_RS07065: AZOBR_RS07065 - membrane protein, at 1,494,605 to 1,495,330
_RS07065
Position (kb)
1493
1494 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1492.612 kb on + strand, within AZOBR_RS07050 at 1492.613 kb on - strand, within AZOBR_RS07050 at 1492.735 kb on + strand, within AZOBR_RS07050 at 1492.736 kb on - strand, within AZOBR_RS07050 at 1492.736 kb on - strand, within AZOBR_RS07050 at 1492.922 kb on - strand, within AZOBR_RS07050 at 1493.539 kb on - strand, within AZOBR_RS07055 at 1493.539 kb on - strand, within AZOBR_RS07055 at 1493.539 kb on - strand, within AZOBR_RS07055 at 1493.775 kb on + strand at 1493.776 kb on - strand at 1493.776 kb on - strand at 1493.827 kb on - strand at 1493.844 kb on - strand at 1493.972 kb on - strand, within AZOBR_RS07060 at 1494.374 kb on + strand at 1494.374 kb on + strand at 1494.375 kb on - strand at 1494.375 kb on - strand at 1494.378 kb on - strand at 1494.378 kb on - strand at 1494.505 kb on + strand at 1494.506 kb on - strand at 1494.506 kb on - strand at 1494.506 kb on - strand at 1494.506 kb on - strand at 1494.506 kb on - strand at 1494.506 kb on - strand at 1494.506 kb on - strand at 1494.707 kb on + strand, within AZOBR_RS07065
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,492,612 + AZOBR_RS07050 0.49 +0.5 1,492,613 - AZOBR_RS07050 0.49 -2.1 1,492,735 + AZOBR_RS07050 0.57 +2.0 1,492,736 - AZOBR_RS07050 0.58 -2.4 1,492,736 - AZOBR_RS07050 0.58 +2.1 1,492,922 - AZOBR_RS07050 0.71 +0.3 1,493,539 - AZOBR_RS07055 0.15 +0.4 1,493,539 - AZOBR_RS07055 0.15 -0.6 1,493,539 - AZOBR_RS07055 0.15 -0.2 1,493,775 + -1.4 1,493,776 - -0.3 1,493,776 - -0.5 1,493,827 - +0.6 1,493,844 - +0.4 1,493,972 - AZOBR_RS07060 0.33 -0.2 1,494,374 + -0.3 1,494,374 + +0.9 1,494,375 - -0.7 1,494,375 - +0.0 1,494,378 - -0.1 1,494,378 - -1.3 1,494,505 + -1.4 1,494,506 - +0.3 1,494,506 - +0.3 1,494,506 - +1.7 1,494,506 - -0.0 1,494,506 - -3.1 1,494,506 - +0.6 1,494,506 - -0.2 1,494,707 + AZOBR_RS07065 0.14 -2.4
Or see this region's nucleotide sequence