Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS07045

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS07040 and AZOBR_RS07045 are separated by 56 nucleotidesAZOBR_RS07045 and AZOBR_RS07050 are separated by 27 nucleotides AZOBR_RS07040: AZOBR_RS07040 - phosphoglucosamine mutase, at 1,489,681 to 1,491,048 _RS07040 AZOBR_RS07045: AZOBR_RS07045 - phosphomethylpyrimidine kinase, at 1,491,105 to 1,491,905 _RS07045 AZOBR_RS07050: AZOBR_RS07050 - transcriptional regulator, at 1,491,933 to 1,493,327 _RS07050 Position (kb) 1491 1492Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1491.046 kb on + strandat 1491.046 kb on + strandat 1491.047 kb on - strandat 1491.903 kb on + strandat 1492.331 kb on - strand, within AZOBR_RS07050at 1492.439 kb on - strand, within AZOBR_RS07050at 1492.439 kb on - strandat 1492.612 kb on + strand, within AZOBR_RS07050at 1492.613 kb on - strand, within AZOBR_RS07050at 1492.735 kb on + strand, within AZOBR_RS07050at 1492.736 kb on - strand, within AZOBR_RS07050at 1492.736 kb on - strand, within AZOBR_RS07050

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,491,046 + -1.1
1,491,046 + -0.6
1,491,047 - -3.7
1,491,903 + -3.0
1,492,331 - AZOBR_RS07050 0.29 +0.1
1,492,439 - AZOBR_RS07050 0.36 +1.0
1,492,439 - -0.1
1,492,612 + AZOBR_RS07050 0.49 +0.5
1,492,613 - AZOBR_RS07050 0.49 -2.1
1,492,735 + AZOBR_RS07050 0.57 +2.0
1,492,736 - AZOBR_RS07050 0.58 -2.4
1,492,736 - AZOBR_RS07050 0.58 +2.1

Or see this region's nucleotide sequence