Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS05265 and AZOBR_RS05270 are separated by 11 nucleotides AZOBR_RS05270 and AZOBR_RS05275 are separated by 213 nucleotides AZOBR_RS05275 and AZOBR_RS05280 are separated by 216 nucleotides AZOBR_RS05280 and AZOBR_RS05285 are separated by 19 nucleotides
AZOBR_RS05265: AZOBR_RS05265 - formate dehydrogenase, at 1,118,673 to 1,119,731
_RS05265
AZOBR_RS05270: AZOBR_RS05270 - exported protein of unknown function, at 1,119,743 to 1,120,132
_RS05270
AZOBR_RS05275: AZOBR_RS05275 - hypothetical protein, at 1,120,346 to 1,121,203
_RS05275
AZOBR_RS05280: AZOBR_RS05280 - fuculose phosphate aldolase, at 1,121,420 to 1,122,118
_RS05280
AZOBR_RS05285: AZOBR_RS05285 - histidine kinase, at 1,122,138 to 1,124,213
_RS05285
Position (kb) 1120
1121
1122 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1119.561 kb on + strand, within AZOBR_RS05265 at 1119.561 kb on + strand, within AZOBR_RS05265 at 1119.562 kb on - strand, within AZOBR_RS05265 at 1119.562 kb on - strand, within AZOBR_RS05265 at 1119.873 kb on - strand, within AZOBR_RS05270 at 1119.873 kb on - strand, within AZOBR_RS05270 at 1119.929 kb on + strand, within AZOBR_RS05270 at 1120.074 kb on - strand, within AZOBR_RS05270 at 1120.147 kb on - strand at 1120.173 kb on - strand at 1120.424 kb on + strand at 1120.760 kb on + strand, within AZOBR_RS05275 at 1120.797 kb on - strand, within AZOBR_RS05275 at 1120.988 kb on - strand, within AZOBR_RS05275 at 1120.988 kb on - strand, within AZOBR_RS05275 at 1121.178 kb on - strand at 1121.319 kb on + strand at 1121.618 kb on + strand, within AZOBR_RS05280 at 1121.618 kb on + strand, within AZOBR_RS05280 at 1121.619 kb on - strand, within AZOBR_RS05280 at 1121.619 kb on - strand, within AZOBR_RS05280 at 1121.619 kb on - strand, within AZOBR_RS05280 at 1121.619 kb on - strand, within AZOBR_RS05280 at 1121.765 kb on + strand, within AZOBR_RS05280 at 1121.765 kb on + strand, within AZOBR_RS05280 at 1121.766 kb on - strand, within AZOBR_RS05280 at 1121.766 kb on - strand, within AZOBR_RS05280 at 1121.810 kb on + strand, within AZOBR_RS05280 at 1122.057 kb on - strand at 1122.057 kb on - strand at 1122.057 kb on - strand at 1122.057 kb on - strand at 1122.057 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,119,561 + AZOBR_RS05265 0.84 +0.6 1,119,561 + AZOBR_RS05265 0.84 +1.0 1,119,562 - AZOBR_RS05265 0.84 +0.8 1,119,562 - AZOBR_RS05265 0.84 +0.8 1,119,873 - AZOBR_RS05270 0.33 +1.3 1,119,873 - AZOBR_RS05270 0.33 +0.4 1,119,929 + AZOBR_RS05270 0.48 +1.1 1,120,074 - AZOBR_RS05270 0.85 +1.0 1,120,147 - +0.0 1,120,173 - -0.0 1,120,424 + +0.3 1,120,760 + AZOBR_RS05275 0.48 -0.9 1,120,797 - AZOBR_RS05275 0.53 -0.0 1,120,988 - AZOBR_RS05275 0.75 +0.3 1,120,988 - AZOBR_RS05275 0.75 -2.9 1,121,178 - +0.8 1,121,319 + +0.4 1,121,618 + AZOBR_RS05280 0.28 +2.6 1,121,618 + AZOBR_RS05280 0.28 -2.8 1,121,619 - AZOBR_RS05280 0.28 -1.9 1,121,619 - AZOBR_RS05280 0.28 -0.7 1,121,619 - AZOBR_RS05280 0.28 +0.7 1,121,619 - AZOBR_RS05280 0.28 +0.7 1,121,765 + AZOBR_RS05280 0.49 -0.7 1,121,765 + AZOBR_RS05280 0.49 -0.5 1,121,766 - AZOBR_RS05280 0.49 +0.2 1,121,766 - AZOBR_RS05280 0.49 +1.7 1,121,810 + AZOBR_RS05280 0.56 +0.5 1,122,057 - +1.7 1,122,057 - +0.3 1,122,057 - +2.3 1,122,057 - +0.0 1,122,057 - -0.6
Or see this region's nucleotide sequence