Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS05175 and AZOBR_RS05180 are separated by 8 nucleotides AZOBR_RS05180 and AZOBR_RS05185 are separated by 455 nucleotides AZOBR_RS05185 and AZOBR_RS05190 are separated by 268 nucleotides
AZOBR_RS05175: AZOBR_RS05175 - ATP-dependent Clp protease ATP-binding protein, at 1,100,949 to 1,103,264
_RS05175
AZOBR_RS05180: AZOBR_RS05180 - Clp protease ClpS, at 1,103,273 to 1,103,599
_RS05180
AZOBR_RS05185: AZOBR_RS05185 - hypothetical protein, at 1,104,055 to 1,104,540
_RS05185
AZOBR_RS05190: AZOBR_RS05190 - hypothetical protein, at 1,104,809 to 1,105,336
_RS05190
Position (kb)
1104
1105 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1103.084 kb on - strand at 1103.194 kb on + strand at 1103.563 kb on + strand, within AZOBR_RS05180 at 1103.626 kb on + strand at 1103.812 kb on + strand at 1103.812 kb on + strand at 1103.812 kb on + strand at 1103.812 kb on + strand at 1103.813 kb on - strand at 1103.813 kb on - strand at 1103.903 kb on + strand at 1104.672 kb on + strand at 1104.954 kb on + strand, within AZOBR_RS05190 at 1104.954 kb on + strand, within AZOBR_RS05190 at 1104.954 kb on + strand, within AZOBR_RS05190 at 1104.954 kb on + strand, within AZOBR_RS05190 at 1104.955 kb on - strand, within AZOBR_RS05190 at 1105.048 kb on - strand, within AZOBR_RS05190 at 1105.540 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,103,084 - -0.2 1,103,194 + -4.1 1,103,563 + AZOBR_RS05180 0.89 -2.6 1,103,626 + +2.8 1,103,812 + -0.5 1,103,812 + +1.3 1,103,812 + -0.6 1,103,812 + -0.4 1,103,813 - +0.7 1,103,813 - +0.8 1,103,903 + +0.8 1,104,672 + +0.4 1,104,954 + AZOBR_RS05190 0.27 -3.2 1,104,954 + AZOBR_RS05190 0.27 +0.4 1,104,954 + AZOBR_RS05190 0.27 +0.0 1,104,954 + AZOBR_RS05190 0.27 -0.5 1,104,955 - AZOBR_RS05190 0.28 -1.5 1,105,048 - AZOBR_RS05190 0.45 +0.3 1,105,540 - -0.0
Or see this region's nucleotide sequence