Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05165

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS05160 and AZOBR_RS05165 are separated by 108 nucleotidesAZOBR_RS05165 and AZOBR_RS05170 are separated by 153 nucleotidesAZOBR_RS05170 and AZOBR_RS05175 are separated by 79 nucleotides AZOBR_RS05160: AZOBR_RS05160 - hypothetical protein, at 1,098,098 to 1,099,303 _RS05160 AZOBR_RS05165: AZOBR_RS05165 - carnitine dehydratase, at 1,099,412 to 1,100,524 _RS05165 AZOBR_RS05170: AZOBR_RS05170 - hypothetical protein, at 1,100,678 to 1,100,869 _RS05170 AZOBR_RS05175: AZOBR_RS05175 - ATP-dependent Clp protease ATP-binding protein, at 1,100,949 to 1,103,264 _RS05175 Position (kb) 1099 1100 1101Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1098.794 kb on + strand, within AZOBR_RS05160at 1098.795 kb on - strand, within AZOBR_RS05160at 1098.795 kb on - strand, within AZOBR_RS05160at 1098.795 kb on - strand, within AZOBR_RS05160at 1098.795 kb on - strand, within AZOBR_RS05160at 1099.406 kb on + strandat 1099.406 kb on + strandat 1099.406 kb on + strandat 1099.815 kb on + strand, within AZOBR_RS05165at 1099.815 kb on + strand, within AZOBR_RS05165at 1099.815 kb on + strand, within AZOBR_RS05165at 1100.095 kb on + strand, within AZOBR_RS05165at 1100.095 kb on + strand, within AZOBR_RS05165at 1100.097 kb on + strand, within AZOBR_RS05165at 1100.097 kb on + strand, within AZOBR_RS05165at 1100.097 kb on + strand, within AZOBR_RS05165at 1100.097 kb on + strand, within AZOBR_RS05165at 1100.097 kb on + strand, within AZOBR_RS05165at 1100.097 kb on + strand, within AZOBR_RS05165at 1100.097 kb on + strand, within AZOBR_RS05165at 1100.098 kb on - strand, within AZOBR_RS05165at 1100.098 kb on - strand, within AZOBR_RS05165at 1100.098 kb on - strand, within AZOBR_RS05165at 1100.098 kb on - strand, within AZOBR_RS05165at 1100.098 kb on - strand, within AZOBR_RS05165at 1100.235 kb on + strand, within AZOBR_RS05165at 1100.347 kb on - strand, within AZOBR_RS05165at 1100.461 kb on - strandat 1100.476 kb on - strandat 1100.703 kb on - strand, within AZOBR_RS05170at 1100.703 kb on - strand, within AZOBR_RS05170at 1100.789 kb on + strand, within AZOBR_RS05170

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,098,794 + AZOBR_RS05160 0.58 +1.0
1,098,795 - AZOBR_RS05160 0.58 -0.3
1,098,795 - AZOBR_RS05160 0.58 +0.0
1,098,795 - AZOBR_RS05160 0.58 +0.2
1,098,795 - AZOBR_RS05160 0.58 -0.9
1,099,406 + -1.8
1,099,406 + -1.0
1,099,406 + +0.3
1,099,815 + AZOBR_RS05165 0.36 +0.7
1,099,815 + AZOBR_RS05165 0.36 +0.0
1,099,815 + AZOBR_RS05165 0.36 +1.0
1,100,095 + AZOBR_RS05165 0.61 -1.2
1,100,095 + AZOBR_RS05165 0.61 +0.7
1,100,097 + AZOBR_RS05165 0.62 -1.6
1,100,097 + AZOBR_RS05165 0.62 +0.5
1,100,097 + AZOBR_RS05165 0.62 +1.2
1,100,097 + AZOBR_RS05165 0.62 -0.7
1,100,097 + AZOBR_RS05165 0.62 +0.6
1,100,097 + AZOBR_RS05165 0.62 -1.2
1,100,097 + AZOBR_RS05165 0.62 -2.0
1,100,098 - AZOBR_RS05165 0.62 +0.8
1,100,098 - AZOBR_RS05165 0.62 -4.2
1,100,098 - AZOBR_RS05165 0.62 -0.1
1,100,098 - AZOBR_RS05165 0.62 -1.4
1,100,098 - AZOBR_RS05165 0.62 +2.1
1,100,235 + AZOBR_RS05165 0.74 -1.4
1,100,347 - AZOBR_RS05165 0.84 +1.5
1,100,461 - -0.2
1,100,476 - +0.2
1,100,703 - AZOBR_RS05170 0.13 -0.0
1,100,703 - AZOBR_RS05170 0.13 +0.7
1,100,789 + AZOBR_RS05170 0.58 -0.5

Or see this region's nucleotide sequence