Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05010

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS05000 and AZOBR_RS05005 are separated by 183 nucleotidesAZOBR_RS05005 and AZOBR_RS05010 are separated by 2 nucleotidesAZOBR_RS05010 and AZOBR_RS05020 are separated by 759 nucleotides AZOBR_RS05000: AZOBR_RS05000 - acriflavine resistance protein B, at 1,057,633 to 1,060,776 _RS05000 AZOBR_RS05005: AZOBR_RS05005 - transposase, at 1,060,960 to 1,061,391 _RS05005 AZOBR_RS05010: AZOBR_RS05010 - transposase, at 1,061,394 to 1,061,765 _RS05010 AZOBR_RS05020: AZOBR_RS05020 - hypothetical protein, at 1,062,525 to 1,062,797 _RS05020 Position (kb) 1061 1062Strain fitness (log2 ratio) -2 -1 0 1at 1061.773 kb on - strandat 1062.542 kb on + strandat 1062.607 kb on + strand, within AZOBR_RS05020at 1062.607 kb on + strand, within AZOBR_RS05020at 1062.607 kb on + strand, within AZOBR_RS05020at 1062.608 kb on - strand, within AZOBR_RS05020

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,061,773 - +0.1
1,062,542 + +1.3
1,062,607 + AZOBR_RS05020 0.30 -2.0
1,062,607 + AZOBR_RS05020 0.30 +0.3
1,062,607 + AZOBR_RS05020 0.30 +0.1
1,062,608 - AZOBR_RS05020 0.30 -0.6

Or see this region's nucleotide sequence