Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS04810

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS04805 and AZOBR_RS04810 are separated by 60 nucleotidesAZOBR_RS04810 and AZOBR_RS04815 are separated by 181 nucleotides AZOBR_RS04805: AZOBR_RS04805 - dihydrolipoyllysine acetyltransferase, at 1,010,469 to 1,011,602 _RS04805 AZOBR_RS04810: AZOBR_RS04810 - shikimate 5-dehydrogenase, at 1,011,663 to 1,012,448 _RS04810 AZOBR_RS04815: AZOBR_RS04815 - radical SAM protein, at 1,012,630 to 1,013,547 _RS04815 Position (kb) 1011 1012 1013Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1010.686 kb on - strand, within AZOBR_RS04805at 1010.853 kb on + strand, within AZOBR_RS04805at 1010.964 kb on + strand, within AZOBR_RS04805at 1010.965 kb on - strand, within AZOBR_RS04805at 1010.965 kb on - strand, within AZOBR_RS04805at 1010.965 kb on - strand, within AZOBR_RS04805at 1011.204 kb on + strand, within AZOBR_RS04805at 1011.204 kb on + strand, within AZOBR_RS04805at 1011.204 kb on + strand, within AZOBR_RS04805at 1011.204 kb on + strand, within AZOBR_RS04805at 1011.318 kb on + strand, within AZOBR_RS04805at 1011.318 kb on + strand, within AZOBR_RS04805at 1012.508 kb on + strandat 1012.508 kb on + strandat 1012.508 kb on + strandat 1013.186 kb on - strand, within AZOBR_RS04815at 1013.186 kb on - strandat 1013.186 kb on - strand, within AZOBR_RS04815at 1013.188 kb on + strand, within AZOBR_RS04815at 1013.188 kb on + strand, within AZOBR_RS04815at 1013.188 kb on + strand, within AZOBR_RS04815at 1013.189 kb on - strand, within AZOBR_RS04815at 1013.413 kb on + strand, within AZOBR_RS04815at 1013.423 kb on + strand, within AZOBR_RS04815

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,010,686 - AZOBR_RS04805 0.19 -3.3
1,010,853 + AZOBR_RS04805 0.34 +1.2
1,010,964 + AZOBR_RS04805 0.44 +0.4
1,010,965 - AZOBR_RS04805 0.44 -0.5
1,010,965 - AZOBR_RS04805 0.44 -1.1
1,010,965 - AZOBR_RS04805 0.44 -0.5
1,011,204 + AZOBR_RS04805 0.65 +2.5
1,011,204 + AZOBR_RS04805 0.65 +0.4
1,011,204 + AZOBR_RS04805 0.65 +0.5
1,011,204 + AZOBR_RS04805 0.65 -0.3
1,011,318 + AZOBR_RS04805 0.75 +0.4
1,011,318 + AZOBR_RS04805 0.75 +0.7
1,012,508 + +1.3
1,012,508 + +0.2
1,012,508 + -0.5
1,013,186 - AZOBR_RS04815 0.61 -1.4
1,013,186 - +2.0
1,013,186 - AZOBR_RS04815 0.61 -2.8
1,013,188 + AZOBR_RS04815 0.61 -0.8
1,013,188 + AZOBR_RS04815 0.61 -0.3
1,013,188 + AZOBR_RS04815 0.61 -0.1
1,013,189 - AZOBR_RS04815 0.61 +0.9
1,013,413 + AZOBR_RS04815 0.85 +1.0
1,013,423 + AZOBR_RS04815 0.86 -0.9

Or see this region's nucleotide sequence