Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04135 and AZOBR_RS04140 are separated by 160 nucleotides AZOBR_RS04140 and AZOBR_RS04145 are separated by 289 nucleotides
AZOBR_RS04135: AZOBR_RS04135 - ABC transporter permease, at 867,125 to 868,117
_RS04135
AZOBR_RS04140: AZOBR_RS04140 - hypothetical protein, at 868,278 to 869,570
_RS04140
AZOBR_RS04145: AZOBR_RS04145 - hypothetical protein, at 869,860 to 871,110
_RS04145
Position (kb) 868
869
870 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 867.372 kb on + strand, within AZOBR_RS04135 at 867.372 kb on + strand, within AZOBR_RS04135 at 867.373 kb on - strand, within AZOBR_RS04135 at 867.373 kb on - strand, within AZOBR_RS04135 at 867.597 kb on + strand, within AZOBR_RS04135 at 867.597 kb on + strand, within AZOBR_RS04135 at 867.598 kb on - strand, within AZOBR_RS04135 at 867.600 kb on + strand, within AZOBR_RS04135 at 867.600 kb on + strand, within AZOBR_RS04135 at 867.600 kb on + strand, within AZOBR_RS04135 at 867.600 kb on + strand, within AZOBR_RS04135 at 867.600 kb on + strand, within AZOBR_RS04135 at 867.600 kb on + strand, within AZOBR_RS04135 at 867.600 kb on + strand, within AZOBR_RS04135 at 867.600 kb on + strand, within AZOBR_RS04135 at 867.600 kb on + strand, within AZOBR_RS04135 at 867.601 kb on - strand, within AZOBR_RS04135 at 867.601 kb on - strand, within AZOBR_RS04135 at 867.906 kb on + strand, within AZOBR_RS04135 at 868.026 kb on + strand at 868.027 kb on - strand at 868.027 kb on - strand at 868.177 kb on + strand at 868.178 kb on - strand at 868.178 kb on - strand at 868.178 kb on - strand at 868.399 kb on + strand at 868.400 kb on - strand at 868.400 kb on - strand at 868.459 kb on + strand, within AZOBR_RS04140 at 868.672 kb on + strand, within AZOBR_RS04140 at 868.673 kb on - strand, within AZOBR_RS04140 at 868.756 kb on + strand, within AZOBR_RS04140 at 868.756 kb on + strand, within AZOBR_RS04140 at 868.756 kb on + strand, within AZOBR_RS04140 at 868.756 kb on + strand, within AZOBR_RS04140 at 868.757 kb on - strand, within AZOBR_RS04140 at 868.757 kb on - strand, within AZOBR_RS04140 at 868.757 kb on - strand, within AZOBR_RS04140 at 868.834 kb on + strand, within AZOBR_RS04140 at 868.835 kb on - strand, within AZOBR_RS04140 at 868.835 kb on - strand, within AZOBR_RS04140 at 868.847 kb on - strand, within AZOBR_RS04140 at 868.936 kb on + strand, within AZOBR_RS04140 at 868.969 kb on + strand, within AZOBR_RS04140 at 868.970 kb on - strand, within AZOBR_RS04140 at 869.353 kb on + strand, within AZOBR_RS04140 at 869.353 kb on + strand, within AZOBR_RS04140 at 869.353 kb on + strand, within AZOBR_RS04140 at 869.353 kb on + strand, within AZOBR_RS04140 at 869.353 kb on + strand, within AZOBR_RS04140 at 869.353 kb on + strand, within AZOBR_RS04140 at 869.353 kb on + strand, within AZOBR_RS04140 at 869.354 kb on - strand, within AZOBR_RS04140 at 869.423 kb on - strand, within AZOBR_RS04140 at 869.423 kb on - strand, within AZOBR_RS04140 at 869.423 kb on - strand, within AZOBR_RS04140 at 869.760 kb on + strand at 869.760 kb on + strand at 869.761 kb on - strand at 869.784 kb on - strand at 869.826 kb on + strand at 869.826 kb on + strand at 869.826 kb on + strand at 869.826 kb on + strand at 869.827 kb on - strand at 869.847 kb on - strand at 869.862 kb on - strand at 869.975 kb on + strand at 869.976 kb on - strand at 869.976 kb on - strand at 869.976 kb on - strand at 870.036 kb on - strand, within AZOBR_RS04145 at 870.155 kb on + strand, within AZOBR_RS04145 at 870.155 kb on + strand, within AZOBR_RS04145 at 870.155 kb on + strand, within AZOBR_RS04145 at 870.155 kb on + strand, within AZOBR_RS04145 at 870.155 kb on + strand, within AZOBR_RS04145 at 870.155 kb on + strand, within AZOBR_RS04145 at 870.156 kb on - strand, within AZOBR_RS04145 at 870.156 kb on - strand, within AZOBR_RS04145 at 870.156 kb on - strand, within AZOBR_RS04145 at 870.302 kb on + strand, within AZOBR_RS04145 at 870.332 kb on + strand, within AZOBR_RS04145 at 870.332 kb on + strand, within AZOBR_RS04145 at 870.332 kb on + strand, within AZOBR_RS04145 at 870.332 kb on + strand, within AZOBR_RS04145 at 870.333 kb on - strand, within AZOBR_RS04145 at 870.333 kb on - strand, within AZOBR_RS04145 at 870.333 kb on - strand, within AZOBR_RS04145 at 870.411 kb on - strand, within AZOBR_RS04145 at 870.422 kb on + strand, within AZOBR_RS04145 at 870.422 kb on + strand, within AZOBR_RS04145 at 870.423 kb on - strand, within AZOBR_RS04145 at 870.458 kb on + strand, within AZOBR_RS04145 at 870.545 kb on + strand, within AZOBR_RS04145 at 870.545 kb on + strand, within AZOBR_RS04145 at 870.545 kb on + strand, within AZOBR_RS04145 at 870.546 kb on - strand, within AZOBR_RS04145 at 870.546 kb on - strand, within AZOBR_RS04145 at 870.546 kb on - strand, within AZOBR_RS04145
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 867,372 + AZOBR_RS04135 0.25 -0.3 867,372 + AZOBR_RS04135 0.25 +1.6 867,373 - AZOBR_RS04135 0.25 +2.2 867,373 - AZOBR_RS04135 0.25 -0.1 867,597 + AZOBR_RS04135 0.48 +1.2 867,597 + AZOBR_RS04135 0.48 -0.0 867,598 - AZOBR_RS04135 0.48 +0.1 867,600 + AZOBR_RS04135 0.48 +0.6 867,600 + AZOBR_RS04135 0.48 -3.7 867,600 + AZOBR_RS04135 0.48 -1.5 867,600 + AZOBR_RS04135 0.48 +0.8 867,600 + AZOBR_RS04135 0.48 -0.1 867,600 + AZOBR_RS04135 0.48 -0.7 867,600 + AZOBR_RS04135 0.48 +0.3 867,600 + AZOBR_RS04135 0.48 +0.7 867,600 + AZOBR_RS04135 0.48 -0.3 867,601 - AZOBR_RS04135 0.48 +1.0 867,601 - AZOBR_RS04135 0.48 +0.6 867,906 + AZOBR_RS04135 0.79 -0.7 868,026 + -1.4 868,027 - -0.0 868,027 - -2.6 868,177 + +0.9 868,178 - +1.4 868,178 - +0.3 868,178 - +1.0 868,399 + +1.8 868,400 - +0.7 868,400 - -3.1 868,459 + AZOBR_RS04140 0.14 -0.6 868,672 + AZOBR_RS04140 0.30 +0.4 868,673 - AZOBR_RS04140 0.31 +0.4 868,756 + AZOBR_RS04140 0.37 -1.6 868,756 + AZOBR_RS04140 0.37 +0.4 868,756 + AZOBR_RS04140 0.37 -1.9 868,756 + AZOBR_RS04140 0.37 +1.4 868,757 - AZOBR_RS04140 0.37 +1.5 868,757 - AZOBR_RS04140 0.37 -1.2 868,757 - AZOBR_RS04140 0.37 -3.3 868,834 + AZOBR_RS04140 0.43 -0.6 868,835 - AZOBR_RS04140 0.43 +0.8 868,835 - AZOBR_RS04140 0.43 +0.3 868,847 - AZOBR_RS04140 0.44 -0.8 868,936 + AZOBR_RS04140 0.51 +0.8 868,969 + AZOBR_RS04140 0.53 +1.5 868,970 - AZOBR_RS04140 0.54 -0.1 869,353 + AZOBR_RS04140 0.83 +0.0 869,353 + AZOBR_RS04140 0.83 +0.5 869,353 + AZOBR_RS04140 0.83 +0.4 869,353 + AZOBR_RS04140 0.83 -0.0 869,353 + AZOBR_RS04140 0.83 +2.1 869,353 + AZOBR_RS04140 0.83 +1.0 869,353 + AZOBR_RS04140 0.83 +1.7 869,354 - AZOBR_RS04140 0.83 -0.2 869,423 - AZOBR_RS04140 0.89 +0.0 869,423 - AZOBR_RS04140 0.89 +0.7 869,423 - AZOBR_RS04140 0.89 +1.5 869,760 + -1.0 869,760 + +0.2 869,761 - -2.3 869,784 - +2.2 869,826 + -0.7 869,826 + -3.6 869,826 + +0.4 869,826 + +0.3 869,827 - -0.0 869,847 - -0.6 869,862 - -0.3 869,975 + +2.5 869,976 - +0.7 869,976 - +1.1 869,976 - +1.8 870,036 - AZOBR_RS04145 0.14 +0.8 870,155 + AZOBR_RS04145 0.24 +0.8 870,155 + AZOBR_RS04145 0.24 +0.3 870,155 + AZOBR_RS04145 0.24 +0.4 870,155 + AZOBR_RS04145 0.24 +0.3 870,155 + AZOBR_RS04145 0.24 -0.3 870,155 + AZOBR_RS04145 0.24 -0.2 870,156 - AZOBR_RS04145 0.24 -0.1 870,156 - AZOBR_RS04145 0.24 -3.0 870,156 - AZOBR_RS04145 0.24 -1.9 870,302 + AZOBR_RS04145 0.35 +1.6 870,332 + AZOBR_RS04145 0.38 -3.0 870,332 + AZOBR_RS04145 0.38 -2.5 870,332 + AZOBR_RS04145 0.38 -0.4 870,332 + AZOBR_RS04145 0.38 +0.8 870,333 - AZOBR_RS04145 0.38 +0.6 870,333 - AZOBR_RS04145 0.38 -0.9 870,333 - AZOBR_RS04145 0.38 -3.1 870,411 - AZOBR_RS04145 0.44 +1.5 870,422 + AZOBR_RS04145 0.45 +0.6 870,422 + AZOBR_RS04145 0.45 +0.4 870,423 - AZOBR_RS04145 0.45 +2.4 870,458 + AZOBR_RS04145 0.48 -3.3 870,545 + AZOBR_RS04145 0.55 -1.3 870,545 + AZOBR_RS04145 0.55 -2.5 870,545 + AZOBR_RS04145 0.55 -2.6 870,546 - AZOBR_RS04145 0.55 +0.2 870,546 - AZOBR_RS04145 0.55 +0.5 870,546 - AZOBR_RS04145 0.55 +1.0
Or see this region's nucleotide sequence