Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03875 and AZOBR_RS03880 are separated by 59 nucleotides AZOBR_RS03880 and AZOBR_RS03885 are separated by 159 nucleotides AZOBR_RS03885 and AZOBR_RS03890 are separated by 149 nucleotides
AZOBR_RS03875: AZOBR_RS03875 - hypothetical protein, at 818,637 to 818,960
_RS03875
AZOBR_RS03880: AZOBR_RS03880 - recombinase RecR, at 819,020 to 819,613
_RS03880
AZOBR_RS03885: AZOBR_RS03885 - phosphoglycerate kinase, at 819,773 to 820,969
_RS03885
AZOBR_RS03890: AZOBR_RS03890 - methyltransferase UbiE, at 821,119 to 822,225
_RS03890
Position (kb) 819
820
821 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 818.959 kb on - strand at 818.959 kb on - strand at 818.980 kb on + strand at 819.326 kb on + strand, within AZOBR_RS03880 at 819.326 kb on + strand, within AZOBR_RS03880 at 819.326 kb on + strand, within AZOBR_RS03880 at 819.326 kb on + strand, within AZOBR_RS03880 at 819.327 kb on - strand, within AZOBR_RS03880 at 819.327 kb on - strand, within AZOBR_RS03880 at 819.327 kb on - strand, within AZOBR_RS03880 at 819.327 kb on - strand, within AZOBR_RS03880 at 819.560 kb on + strand at 819.611 kb on + strand at 819.774 kb on + strand at 819.774 kb on + strand at 819.774 kb on + strand at 819.775 kb on - strand at 819.775 kb on - strand at 819.775 kb on - strand at 821.113 kb on - strand at 821.113 kb on - strand at 821.239 kb on + strand, within AZOBR_RS03890 at 821.239 kb on + strand, within AZOBR_RS03890 at 821.240 kb on - strand, within AZOBR_RS03890 at 821.240 kb on - strand, within AZOBR_RS03890 at 821.240 kb on - strand, within AZOBR_RS03890 at 821.240 kb on - strand, within AZOBR_RS03890 at 821.386 kb on + strand, within AZOBR_RS03890 at 821.390 kb on - strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.819 kb on - strand, within AZOBR_RS03890 at 821.819 kb on - strand, within AZOBR_RS03890 at 821.935 kb on + strand, within AZOBR_RS03890 at 821.935 kb on + strand, within AZOBR_RS03890 at 821.936 kb on - strand, within AZOBR_RS03890
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 818,959 - -5.2 818,959 - -2.8 818,980 + +0.2 819,326 + AZOBR_RS03880 0.52 -3.2 819,326 + AZOBR_RS03880 0.52 -3.7 819,326 + AZOBR_RS03880 0.52 -4.8 819,326 + AZOBR_RS03880 0.52 +0.7 819,327 - AZOBR_RS03880 0.52 -2.7 819,327 - AZOBR_RS03880 0.52 -2.2 819,327 - AZOBR_RS03880 0.52 -2.3 819,327 - AZOBR_RS03880 0.52 +0.7 819,560 + -4.3 819,611 + -0.2 819,774 + +0.0 819,774 + -0.9 819,774 + +0.9 819,775 - -1.1 819,775 - -2.3 819,775 - +1.5 821,113 - +0.2 821,113 - +1.1 821,239 + AZOBR_RS03890 0.11 +1.4 821,239 + AZOBR_RS03890 0.11 +0.1 821,240 - AZOBR_RS03890 0.11 -0.0 821,240 - AZOBR_RS03890 0.11 +0.2 821,240 - AZOBR_RS03890 0.11 +0.4 821,240 - AZOBR_RS03890 0.11 -3.1 821,386 + AZOBR_RS03890 0.24 -0.9 821,390 - AZOBR_RS03890 0.24 +0.0 821,548 + AZOBR_RS03890 0.39 -0.1 821,548 + AZOBR_RS03890 0.39 +0.4 821,548 + AZOBR_RS03890 0.39 +1.5 821,548 + AZOBR_RS03890 0.39 +0.1 821,548 + AZOBR_RS03890 0.39 +1.2 821,819 - AZOBR_RS03890 0.63 -0.7 821,819 - AZOBR_RS03890 0.63 +0.7 821,935 + AZOBR_RS03890 0.74 +0.2 821,935 + AZOBR_RS03890 0.74 -1.3 821,936 - AZOBR_RS03890 0.74 +0.4
Or see this region's nucleotide sequence