Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02965 and AZOBR_RS02970 are separated by 11 nucleotides AZOBR_RS02970 and AZOBR_RS02975 are separated by 331 nucleotides AZOBR_RS02975 and AZOBR_RS02980 are separated by 7 nucleotides
AZOBR_RS02965: AZOBR_RS02965 - DNA polymerase III subunit epsilon, at 629,387 to 630,007
_RS02965
AZOBR_RS02970: AZOBR_RS02970 - DNA mismatch repair protein MutT, at 630,019 to 630,609
_RS02970
AZOBR_RS02975: AZOBR_RS02975 - hypothetical protein, at 630,941 to 631,960
_RS02975
AZOBR_RS02980: AZOBR_RS02980 - ABC transporter permease, at 631,968 to 633,296
_RS02980
Position (kb) 630
631
632 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 630.140 kb on + strand, within AZOBR_RS02970 at 630.140 kb on + strand, within AZOBR_RS02970 at 630.141 kb on - strand, within AZOBR_RS02970 at 630.141 kb on - strand, within AZOBR_RS02970 at 630.389 kb on + strand, within AZOBR_RS02970 at 630.389 kb on + strand, within AZOBR_RS02970 at 630.390 kb on - strand, within AZOBR_RS02970 at 630.491 kb on + strand, within AZOBR_RS02970 at 630.557 kb on + strand at 630.557 kb on + strand at 630.642 kb on + strand at 630.643 kb on - strand at 630.674 kb on + strand at 630.674 kb on + strand at 630.674 kb on + strand at 630.674 kb on + strand at 630.675 kb on - strand at 630.675 kb on - strand at 630.675 kb on - strand at 630.676 kb on + strand at 630.676 kb on + strand at 630.676 kb on + strand at 630.676 kb on + strand at 630.677 kb on - strand at 630.860 kb on + strand at 630.860 kb on + strand at 630.869 kb on - strand at 631.020 kb on - strand at 631.379 kb on + strand, within AZOBR_RS02975 at 631.379 kb on + strand, within AZOBR_RS02975 at 631.379 kb on + strand, within AZOBR_RS02975 at 631.380 kb on - strand, within AZOBR_RS02975 at 631.380 kb on - strand, within AZOBR_RS02975 at 631.380 kb on - strand, within AZOBR_RS02975 at 631.380 kb on - strand, within AZOBR_RS02975 at 631.700 kb on + strand, within AZOBR_RS02975 at 631.701 kb on - strand, within AZOBR_RS02975 at 632.162 kb on + strand, within AZOBR_RS02980 at 632.162 kb on + strand, within AZOBR_RS02980 at 632.162 kb on + strand, within AZOBR_RS02980 at 632.163 kb on - strand, within AZOBR_RS02980 at 632.323 kb on + strand, within AZOBR_RS02980 at 632.443 kb on + strand, within AZOBR_RS02980 at 632.443 kb on + strand, within AZOBR_RS02980 at 632.444 kb on - strand, within AZOBR_RS02980 at 632.444 kb on - strand, within AZOBR_RS02980 at 632.743 kb on + strand, within AZOBR_RS02980 at 632.743 kb on + strand, within AZOBR_RS02980 at 632.744 kb on - strand, within AZOBR_RS02980 at 632.750 kb on - strand, within AZOBR_RS02980 at 632.750 kb on - strand, within AZOBR_RS02980 at 632.750 kb on - strand, within AZOBR_RS02980 at 632.750 kb on - strand, within AZOBR_RS02980 at 632.833 kb on + strand, within AZOBR_RS02980 at 632.834 kb on - strand, within AZOBR_RS02980 at 632.834 kb on - strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.951 kb on - strand, within AZOBR_RS02980
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 630,140 + AZOBR_RS02970 0.20 +0.3 630,140 + AZOBR_RS02970 0.20 -2.1 630,141 - AZOBR_RS02970 0.21 +0.5 630,141 - AZOBR_RS02970 0.21 +0.4 630,389 + AZOBR_RS02970 0.63 -1.6 630,389 + AZOBR_RS02970 0.63 -3.3 630,390 - AZOBR_RS02970 0.63 -1.6 630,491 + AZOBR_RS02970 0.80 +0.5 630,557 + -2.1 630,557 + -0.5 630,642 + +1.0 630,643 - -3.8 630,674 + -0.6 630,674 + +0.6 630,674 + -0.4 630,674 + +0.9 630,675 - -4.1 630,675 - +0.5 630,675 - -3.1 630,676 + -1.1 630,676 + -2.4 630,676 + -1.4 630,676 + -0.8 630,677 - +0.0 630,860 + +0.9 630,860 + -1.9 630,869 - +0.2 631,020 - -0.6 631,379 + AZOBR_RS02975 0.43 -3.3 631,379 + AZOBR_RS02975 0.43 -3.0 631,379 + AZOBR_RS02975 0.43 -0.3 631,380 - AZOBR_RS02975 0.43 +1.3 631,380 - AZOBR_RS02975 0.43 -1.1 631,380 - AZOBR_RS02975 0.43 -0.6 631,380 - AZOBR_RS02975 0.43 +0.7 631,700 + AZOBR_RS02975 0.74 -1.6 631,701 - AZOBR_RS02975 0.75 -0.4 632,162 + AZOBR_RS02980 0.15 -4.9 632,162 + AZOBR_RS02980 0.15 -3.0 632,162 + AZOBR_RS02980 0.15 -1.3 632,163 - AZOBR_RS02980 0.15 +0.8 632,323 + AZOBR_RS02980 0.27 +0.7 632,443 + AZOBR_RS02980 0.36 +0.7 632,443 + AZOBR_RS02980 0.36 +1.2 632,444 - AZOBR_RS02980 0.36 -0.3 632,444 - AZOBR_RS02980 0.36 +0.1 632,743 + AZOBR_RS02980 0.58 +0.7 632,743 + AZOBR_RS02980 0.58 +0.6 632,744 - AZOBR_RS02980 0.58 +0.3 632,750 - AZOBR_RS02980 0.59 -2.6 632,750 - AZOBR_RS02980 0.59 -0.2 632,750 - AZOBR_RS02980 0.59 -0.8 632,750 - AZOBR_RS02980 0.59 +1.3 632,833 + AZOBR_RS02980 0.65 -3.2 632,834 - AZOBR_RS02980 0.65 -1.9 632,834 - AZOBR_RS02980 0.65 +1.3 632,950 + AZOBR_RS02980 0.74 -3.1 632,950 + AZOBR_RS02980 0.74 -0.0 632,950 + AZOBR_RS02980 0.74 -0.1 632,950 + AZOBR_RS02980 0.74 +2.4 632,950 + AZOBR_RS02980 0.74 -1.7 632,950 + AZOBR_RS02980 0.74 +0.4 632,950 + AZOBR_RS02980 0.74 +0.7 632,951 - AZOBR_RS02980 0.74 -0.6
Or see this region's nucleotide sequence