Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02670 and AZOBR_RS02675 are separated by 58 nucleotides AZOBR_RS02675 and AZOBR_RS02680 are separated by 164 nucleotides AZOBR_RS02680 and AZOBR_RS02685 are separated by 177 nucleotides
AZOBR_RS02670: AZOBR_RS02670 - phosphoglucomutase, at 557,918 to 559,549
_RS02670
AZOBR_RS02675: AZOBR_RS02675 - carboxymethylenebutenolidase, at 559,608 to 560,294
_RS02675
AZOBR_RS02680: AZOBR_RS02680 - methionine sulfoxide reductase B, at 560,459 to 560,908
_RS02680
AZOBR_RS02685: AZOBR_RS02685 - alkane 1-monooxygenase, at 561,086 to 562,105
_RS02685
Position (kb) 560
561 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 559.547 kb on + strand at 559.547 kb on + strand at 559.548 kb on - strand at 559.609 kb on + strand at 559.673 kb on - strand at 559.859 kb on - strand, within AZOBR_RS02675 at 559.859 kb on - strand, within AZOBR_RS02675 at 560.108 kb on - strand, within AZOBR_RS02675 at 560.218 kb on + strand, within AZOBR_RS02675 at 560.333 kb on + strand at 560.333 kb on + strand at 560.333 kb on + strand at 560.334 kb on - strand at 560.594 kb on + strand, within AZOBR_RS02680 at 560.594 kb on + strand, within AZOBR_RS02680 at 560.594 kb on + strand, within AZOBR_RS02680 at 560.595 kb on - strand, within AZOBR_RS02680 at 560.595 kb on - strand, within AZOBR_RS02680 at 560.595 kb on - strand, within AZOBR_RS02680 at 560.595 kb on - strand, within AZOBR_RS02680 at 560.595 kb on - strand, within AZOBR_RS02680 at 560.681 kb on + strand, within AZOBR_RS02680 at 560.682 kb on - strand, within AZOBR_RS02680 at 560.720 kb on + strand, within AZOBR_RS02680 at 560.720 kb on + strand, within AZOBR_RS02680 at 560.721 kb on - strand, within AZOBR_RS02680 at 560.721 kb on - strand, within AZOBR_RS02680 at 560.721 kb on - strand, within AZOBR_RS02680 at 560.907 kb on - strand at 560.907 kb on - strand at 560.937 kb on + strand at 560.938 kb on - strand at 560.951 kb on + strand at 560.952 kb on - strand at 560.983 kb on + strand at 560.984 kb on - strand at 561.705 kb on - strand, within AZOBR_RS02685 at 561.747 kb on - strand, within AZOBR_RS02685 at 561.747 kb on - strand, within AZOBR_RS02685 at 561.747 kb on - strand, within AZOBR_RS02685
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 559,547 + +0.5 559,547 + -1.3 559,548 - -0.4 559,609 + +1.1 559,673 - -0.5 559,859 - AZOBR_RS02675 0.37 +0.8 559,859 - AZOBR_RS02675 0.37 -0.8 560,108 - AZOBR_RS02675 0.73 +1.0 560,218 + AZOBR_RS02675 0.89 -1.9 560,333 + +0.1 560,333 + +0.8 560,333 + +1.0 560,334 - +0.2 560,594 + AZOBR_RS02680 0.30 +1.0 560,594 + AZOBR_RS02680 0.30 -1.2 560,594 + AZOBR_RS02680 0.30 +1.2 560,595 - AZOBR_RS02680 0.30 -1.0 560,595 - AZOBR_RS02680 0.30 +0.7 560,595 - AZOBR_RS02680 0.30 -4.8 560,595 - AZOBR_RS02680 0.30 -2.8 560,595 - AZOBR_RS02680 0.30 +0.5 560,681 + AZOBR_RS02680 0.49 -1.5 560,682 - AZOBR_RS02680 0.50 -2.6 560,720 + AZOBR_RS02680 0.58 -0.3 560,720 + AZOBR_RS02680 0.58 -0.2 560,721 - AZOBR_RS02680 0.58 -0.3 560,721 - AZOBR_RS02680 0.58 -1.7 560,721 - AZOBR_RS02680 0.58 +0.1 560,907 - +1.0 560,907 - -0.1 560,937 + +1.5 560,938 - +0.8 560,951 + -0.7 560,952 - +0.7 560,983 + +0.7 560,984 - +0.4 561,705 - AZOBR_RS02685 0.61 -0.1 561,747 - AZOBR_RS02685 0.65 -0.6 561,747 - AZOBR_RS02685 0.65 +0.9 561,747 - AZOBR_RS02685 0.65 -1.1
Or see this region's nucleotide sequence