Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02465 and AZOBR_RS02470 are separated by 321 nucleotides AZOBR_RS02470 and AZOBR_RS02475 are separated by 48 nucleotides
AZOBR_RS02465: AZOBR_RS02465 - endonuclease, at 511,481 to 512,191
_RS02465
AZOBR_RS02470: AZOBR_RS02470 - esterase, at 512,513 to 513,733
_RS02470
AZOBR_RS02475: AZOBR_RS02475 - heme A synthase, at 513,782 to 514,867
_RS02475
Position (kb) 512
513
514 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 512.084 kb on + strand, within AZOBR_RS02465 at 512.114 kb on + strand, within AZOBR_RS02465 at 512.115 kb on - strand, within AZOBR_RS02465 at 512.350 kb on + strand at 512.351 kb on - strand at 512.461 kb on + strand at 512.461 kb on + strand at 512.462 kb on - strand at 512.520 kb on - strand at 512.528 kb on + strand at 512.618 kb on + strand at 512.619 kb on - strand at 512.972 kb on + strand, within AZOBR_RS02470 at 512.972 kb on + strand, within AZOBR_RS02470 at 512.972 kb on + strand, within AZOBR_RS02470 at 512.972 kb on + strand, within AZOBR_RS02470 at 512.973 kb on - strand, within AZOBR_RS02470 at 513.230 kb on + strand, within AZOBR_RS02470 at 513.383 kb on + strand, within AZOBR_RS02470 at 513.392 kb on + strand, within AZOBR_RS02470 at 513.392 kb on + strand, within AZOBR_RS02470 at 513.392 kb on + strand, within AZOBR_RS02470 at 513.392 kb on + strand at 513.393 kb on - strand, within AZOBR_RS02470 at 513.393 kb on - strand, within AZOBR_RS02470 at 513.620 kb on - strand at 513.620 kb on - strand at 513.657 kb on - strand at 513.657 kb on - strand at 513.740 kb on + strand at 513.881 kb on + strand at 514.155 kb on + strand, within AZOBR_RS02475 at 514.323 kb on + strand, within AZOBR_RS02475 at 514.323 kb on + strand, within AZOBR_RS02475 at 514.407 kb on + strand, within AZOBR_RS02475 at 514.407 kb on + strand, within AZOBR_RS02475 at 514.407 kb on + strand, within AZOBR_RS02475 at 514.408 kb on - strand, within AZOBR_RS02475 at 514.408 kb on - strand, within AZOBR_RS02475 at 514.609 kb on - strand, within AZOBR_RS02475 at 514.609 kb on - strand, within AZOBR_RS02475 at 514.609 kb on - strand, within AZOBR_RS02475 at 514.635 kb on + strand, within AZOBR_RS02475 at 514.635 kb on + strand, within AZOBR_RS02475 at 514.635 kb on + strand, within AZOBR_RS02475
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 512,084 + AZOBR_RS02465 0.85 -1.5 512,114 + AZOBR_RS02465 0.89 +0.7 512,115 - AZOBR_RS02465 0.89 -0.4 512,350 + -2.2 512,351 - -3.0 512,461 + -1.1 512,461 + -2.1 512,462 - -2.7 512,520 - +0.7 512,528 + +0.6 512,618 + -1.8 512,619 - -3.0 512,972 + AZOBR_RS02470 0.38 -0.1 512,972 + AZOBR_RS02470 0.38 -1.9 512,972 + AZOBR_RS02470 0.38 +0.2 512,972 + AZOBR_RS02470 0.38 +0.0 512,973 - AZOBR_RS02470 0.38 +0.2 513,230 + AZOBR_RS02470 0.59 -0.1 513,383 + AZOBR_RS02470 0.71 +0.6 513,392 + AZOBR_RS02470 0.72 +0.1 513,392 + AZOBR_RS02470 0.72 +0.3 513,392 + AZOBR_RS02470 0.72 +1.1 513,392 + +0.2 513,393 - AZOBR_RS02470 0.72 -0.5 513,393 - AZOBR_RS02470 0.72 +1.5 513,620 - +0.3 513,620 - -0.1 513,657 - -4.0 513,657 - +0.7 513,740 + -4.0 513,881 + -1.8 514,155 + AZOBR_RS02475 0.34 +0.9 514,323 + AZOBR_RS02475 0.50 +1.1 514,323 + AZOBR_RS02475 0.50 +0.9 514,407 + AZOBR_RS02475 0.58 -0.8 514,407 + AZOBR_RS02475 0.58 -3.7 514,407 + AZOBR_RS02475 0.58 +1.0 514,408 - AZOBR_RS02475 0.58 -0.0 514,408 - AZOBR_RS02475 0.58 +0.6 514,609 - AZOBR_RS02475 0.76 +3.2 514,609 - AZOBR_RS02475 0.76 -1.1 514,609 - AZOBR_RS02475 0.76 +1.1 514,635 + AZOBR_RS02475 0.79 -0.0 514,635 + AZOBR_RS02475 0.79 +0.4 514,635 + AZOBR_RS02475 0.79 +1.1
Or see this region's nucleotide sequence