Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02190 and AZOBR_RS02195 are separated by 189 nucleotides AZOBR_RS02195 and AZOBR_RS02200 overlap by 13 nucleotides AZOBR_RS02200 and AZOBR_RS02205 are separated by 144 nucleotides
AZOBR_RS02190: AZOBR_RS02190 - methyl-accepting chemotaxis protein, at 448,645 to 450,336
_RS02190
AZOBR_RS02195: AZOBR_RS02195 - coproporphyrinogen III oxidase, at 450,526 to 451,692
_RS02195
AZOBR_RS02200: AZOBR_RS02200 - nucleoside-triphosphate diphosphatase, at 451,680 to 452,282
_RS02200
AZOBR_RS02205: AZOBR_RS02205 - ribonuclease PH, at 452,427 to 453,146
_RS02205
Position (kb) 450
451
452 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 449.852 kb on + strand, within AZOBR_RS02190 at 449.852 kb on + strand, within AZOBR_RS02190 at 449.852 kb on + strand, within AZOBR_RS02190 at 449.852 kb on + strand, within AZOBR_RS02190 at 449.853 kb on - strand, within AZOBR_RS02190 at 449.853 kb on - strand, within AZOBR_RS02190 at 449.853 kb on - strand, within AZOBR_RS02190 at 449.853 kb on - strand, within AZOBR_RS02190 at 449.903 kb on + strand, within AZOBR_RS02190 at 449.904 kb on - strand, within AZOBR_RS02190 at 450.059 kb on + strand, within AZOBR_RS02190 at 450.059 kb on + strand, within AZOBR_RS02190 at 450.059 kb on + strand, within AZOBR_RS02190 at 450.060 kb on - strand, within AZOBR_RS02190 at 450.060 kb on - strand, within AZOBR_RS02190 at 450.242 kb on + strand at 450.243 kb on - strand at 450.446 kb on + strand at 450.458 kb on + strand at 450.460 kb on + strand at 450.461 kb on - strand at 450.900 kb on - strand, within AZOBR_RS02195 at 450.918 kb on - strand, within AZOBR_RS02195 at 450.918 kb on - strand, within AZOBR_RS02195 at 450.971 kb on + strand, within AZOBR_RS02195 at 451.017 kb on - strand, within AZOBR_RS02195 at 451.193 kb on + strand, within AZOBR_RS02195 at 451.194 kb on - strand, within AZOBR_RS02195 at 451.620 kb on - strand at 451.655 kb on + strand at 451.655 kb on + strand at 451.655 kb on + strand at 451.655 kb on + strand at 451.656 kb on - strand at 451.805 kb on - strand, within AZOBR_RS02200 at 452.008 kb on + strand, within AZOBR_RS02200 at 452.008 kb on + strand at 452.008 kb on + strand, within AZOBR_RS02200 at 452.008 kb on + strand, within AZOBR_RS02200 at 452.008 kb on + strand, within AZOBR_RS02200 at 452.009 kb on - strand, within AZOBR_RS02200 at 452.009 kb on - strand, within AZOBR_RS02200 at 452.428 kb on + strand at 452.428 kb on + strand at 452.428 kb on + strand at 452.429 kb on - strand at 452.429 kb on - strand at 452.647 kb on + strand, within AZOBR_RS02205 at 452.647 kb on + strand, within AZOBR_RS02205 at 452.647 kb on + strand, within AZOBR_RS02205 at 452.647 kb on + strand, within AZOBR_RS02205 at 452.647 kb on + strand, within AZOBR_RS02205 at 452.647 kb on + strand, within AZOBR_RS02205
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 449,852 + AZOBR_RS02190 0.71 -2.4 449,852 + AZOBR_RS02190 0.71 -0.4 449,852 + AZOBR_RS02190 0.71 +0.2 449,852 + AZOBR_RS02190 0.71 -0.3 449,853 - AZOBR_RS02190 0.71 -1.2 449,853 - AZOBR_RS02190 0.71 +0.3 449,853 - AZOBR_RS02190 0.71 -0.9 449,853 - AZOBR_RS02190 0.71 +0.4 449,903 + AZOBR_RS02190 0.74 +1.5 449,904 - AZOBR_RS02190 0.74 +2.0 450,059 + AZOBR_RS02190 0.84 -2.1 450,059 + AZOBR_RS02190 0.84 -3.9 450,059 + AZOBR_RS02190 0.84 +0.8 450,060 - AZOBR_RS02190 0.84 +0.5 450,060 - AZOBR_RS02190 0.84 -0.6 450,242 + -1.5 450,243 - +0.4 450,446 + +0.2 450,458 + +0.4 450,460 + -0.7 450,461 - +0.1 450,900 - AZOBR_RS02195 0.32 +0.9 450,918 - AZOBR_RS02195 0.34 -3.1 450,918 - AZOBR_RS02195 0.34 +0.9 450,971 + AZOBR_RS02195 0.38 +1.7 451,017 - AZOBR_RS02195 0.42 -1.4 451,193 + AZOBR_RS02195 0.57 +2.4 451,194 - AZOBR_RS02195 0.57 +0.3 451,620 - -0.0 451,655 + -0.5 451,655 + +0.8 451,655 + +0.7 451,655 + +1.0 451,656 - -1.5 451,805 - AZOBR_RS02200 0.21 +2.0 452,008 + AZOBR_RS02200 0.54 +1.7 452,008 + -0.4 452,008 + AZOBR_RS02200 0.54 -0.3 452,008 + AZOBR_RS02200 0.54 +1.0 452,008 + AZOBR_RS02200 0.54 +1.3 452,009 - AZOBR_RS02200 0.55 +1.2 452,009 - AZOBR_RS02200 0.55 +3.2 452,428 + -0.1 452,428 + +1.5 452,428 + +0.6 452,429 - -1.1 452,429 - -0.4 452,647 + AZOBR_RS02205 0.31 -0.3 452,647 + AZOBR_RS02205 0.31 -3.1 452,647 + AZOBR_RS02205 0.31 -0.8 452,647 + AZOBR_RS02205 0.31 -0.3 452,647 + AZOBR_RS02205 0.31 -1.2 452,647 + AZOBR_RS02205 0.31 +0.2
Or see this region's nucleotide sequence