Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02010 and AZOBR_RS02015 are separated by 211 nucleotides AZOBR_RS02015 and AZOBR_RS02020 overlap by 4 nucleotides AZOBR_RS02020 and AZOBR_RS02025 are separated by 3 nucleotides
AZOBR_RS02010: AZOBR_RS02010 - glutamine amidotransferase, at 411,840 to 412,601
_RS02010
AZOBR_RS02015: AZOBR_RS02015 - S-adenosylmethionine decarboxylase, at 412,813 to 413,322
_RS02015
AZOBR_RS02020: AZOBR_RS02020 - spermidine synthase, at 413,319 to 414,179
_RS02020
AZOBR_RS02025: AZOBR_RS02025 - transporter, at 414,183 to 415,673
_RS02025
Position (kb) 413
414
415 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.758 kb on + strand at 413.361 kb on - strand at 413.847 kb on + strand, within AZOBR_RS02020 at 413.847 kb on + strand, within AZOBR_RS02020 at 413.847 kb on + strand, within AZOBR_RS02020 at 413.847 kb on + strand, within AZOBR_RS02020 at 413.847 kb on + strand, within AZOBR_RS02020 at 413.848 kb on - strand, within AZOBR_RS02020 at 413.848 kb on - strand, within AZOBR_RS02020 at 413.848 kb on - strand, within AZOBR_RS02020 at 414.000 kb on + strand, within AZOBR_RS02020 at 414.000 kb on + strand, within AZOBR_RS02020 at 414.001 kb on - strand, within AZOBR_RS02020 at 414.001 kb on - strand, within AZOBR_RS02020 at 414.001 kb on - strand, within AZOBR_RS02020 at 414.001 kb on - strand, within AZOBR_RS02020 at 414.004 kb on - strand, within AZOBR_RS02020 at 414.114 kb on + strand at 414.114 kb on + strand at 414.115 kb on - strand at 414.115 kb on - strand at 414.178 kb on - strand at 414.974 kb on - strand, within AZOBR_RS02025 at 415.021 kb on - strand, within AZOBR_RS02025
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 412,519 + AZOBR_RS02010 0.89 -1.1 412,519 + AZOBR_RS02010 0.89 -0.2 412,519 + AZOBR_RS02010 0.89 +0.5 412,519 + AZOBR_RS02010 0.89 -2.8 412,519 + AZOBR_RS02010 0.89 +1.3 412,519 + AZOBR_RS02010 0.89 +0.3 412,519 + AZOBR_RS02010 0.89 -0.2 412,519 + AZOBR_RS02010 0.89 -1.6 412,519 + AZOBR_RS02010 0.89 +0.4 412,519 + AZOBR_RS02010 0.89 +1.6 412,519 + AZOBR_RS02010 0.89 +0.8 412,519 + AZOBR_RS02010 0.89 -1.0 412,520 - AZOBR_RS02010 0.89 +1.5 412,520 - AZOBR_RS02010 0.89 +0.6 412,520 - AZOBR_RS02010 0.89 +1.5 412,520 - AZOBR_RS02010 0.89 +0.8 412,520 - AZOBR_RS02010 0.89 -0.7 412,520 - AZOBR_RS02010 0.89 +1.7 412,520 - AZOBR_RS02010 0.89 -0.3 412,520 - AZOBR_RS02010 0.89 -0.1 412,758 + +0.1 413,361 - -1.1 413,847 + AZOBR_RS02020 0.61 +0.8 413,847 + AZOBR_RS02020 0.61 +0.9 413,847 + AZOBR_RS02020 0.61 -3.0 413,847 + AZOBR_RS02020 0.61 +1.2 413,847 + AZOBR_RS02020 0.61 +1.0 413,848 - AZOBR_RS02020 0.61 -2.7 413,848 - AZOBR_RS02020 0.61 +0.1 413,848 - AZOBR_RS02020 0.61 +0.4 414,000 + AZOBR_RS02020 0.79 -0.6 414,000 + AZOBR_RS02020 0.79 -0.2 414,001 - AZOBR_RS02020 0.79 +0.3 414,001 - AZOBR_RS02020 0.79 -1.6 414,001 - AZOBR_RS02020 0.79 -0.3 414,001 - AZOBR_RS02020 0.79 +0.6 414,004 - AZOBR_RS02020 0.80 -1.1 414,114 + -0.1 414,114 + -3.7 414,115 - +0.1 414,115 - +0.4 414,178 - -0.6 414,974 - AZOBR_RS02025 0.53 +1.0 415,021 - AZOBR_RS02025 0.56 +1.5
Or see this region's nucleotide sequence