Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02000 and AZOBR_RS02005 are separated by 466 nucleotides AZOBR_RS02005 and AZOBR_RS02010 are separated by 88 nucleotides
AZOBR_RS02000: AZOBR_RS02000 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 410,176 to 410,859
_RS02000
AZOBR_RS02005: AZOBR_RS02005 - transcriptional regulator, at 411,326 to 411,751
_RS02005
AZOBR_RS02010: AZOBR_RS02010 - glutamine amidotransferase, at 411,840 to 412,601
_RS02010
Position (kb) 411
412 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 410.549 kb on + strand, within AZOBR_RS02000 at 410.555 kb on + strand, within AZOBR_RS02000 at 410.555 kb on + strand, within AZOBR_RS02000 at 410.556 kb on - strand, within AZOBR_RS02000 at 410.556 kb on - strand, within AZOBR_RS02000 at 410.556 kb on - strand, within AZOBR_RS02000 at 410.556 kb on - strand, within AZOBR_RS02000 at 410.657 kb on + strand, within AZOBR_RS02000 at 410.763 kb on - strand, within AZOBR_RS02000 at 410.780 kb on + strand, within AZOBR_RS02000 at 410.780 kb on + strand, within AZOBR_RS02000 at 410.780 kb on + strand, within AZOBR_RS02000 at 410.780 kb on + strand, within AZOBR_RS02000 at 410.781 kb on - strand, within AZOBR_RS02000 at 410.781 kb on - strand, within AZOBR_RS02000 at 410.852 kb on + strand at 411.100 kb on + strand at 411.100 kb on + strand at 411.101 kb on - strand at 411.216 kb on + strand at 411.216 kb on + strand at 411.227 kb on + strand at 411.228 kb on - strand at 411.228 kb on - strand at 411.228 kb on - strand at 411.232 kb on + strand at 411.232 kb on + strand at 411.232 kb on + strand at 411.233 kb on - strand at 411.233 kb on - strand at 411.359 kb on + strand at 411.599 kb on + strand, within AZOBR_RS02005 at 411.815 kb on + strand at 412.147 kb on + strand, within AZOBR_RS02010 at 412.148 kb on - strand, within AZOBR_RS02010 at 412.192 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.519 kb on + strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010 at 412.520 kb on - strand, within AZOBR_RS02010
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 410,549 + AZOBR_RS02000 0.55 +2.6 410,555 + AZOBR_RS02000 0.55 -2.9 410,555 + AZOBR_RS02000 0.55 -1.2 410,556 - AZOBR_RS02000 0.56 +1.9 410,556 - AZOBR_RS02000 0.56 +0.9 410,556 - AZOBR_RS02000 0.56 +0.9 410,556 - AZOBR_RS02000 0.56 +0.4 410,657 + AZOBR_RS02000 0.70 -4.0 410,763 - AZOBR_RS02000 0.86 -2.7 410,780 + AZOBR_RS02000 0.88 +0.9 410,780 + AZOBR_RS02000 0.88 +2.2 410,780 + AZOBR_RS02000 0.88 -2.0 410,780 + AZOBR_RS02000 0.88 +1.1 410,781 - AZOBR_RS02000 0.88 +0.4 410,781 - AZOBR_RS02000 0.88 -0.3 410,852 + -2.7 411,100 + -0.6 411,100 + +0.5 411,101 - +0.2 411,216 + +0.2 411,216 + -1.9 411,227 + +0.1 411,228 - -2.9 411,228 - -0.8 411,228 - -0.3 411,232 + -2.7 411,232 + -1.9 411,232 + -0.9 411,233 - -1.6 411,233 - -0.8 411,359 + -2.8 411,599 + AZOBR_RS02005 0.64 -1.1 411,815 + -3.0 412,147 + AZOBR_RS02010 0.40 +0.7 412,148 - AZOBR_RS02010 0.40 +0.5 412,192 + AZOBR_RS02010 0.46 +0.4 412,519 + AZOBR_RS02010 0.89 -1.1 412,519 + AZOBR_RS02010 0.89 -0.2 412,519 + AZOBR_RS02010 0.89 +0.5 412,519 + AZOBR_RS02010 0.89 -2.8 412,519 + AZOBR_RS02010 0.89 +1.3 412,519 + AZOBR_RS02010 0.89 +0.3 412,519 + AZOBR_RS02010 0.89 -0.2 412,519 + AZOBR_RS02010 0.89 -1.6 412,519 + AZOBR_RS02010 0.89 +0.4 412,519 + AZOBR_RS02010 0.89 +1.6 412,519 + AZOBR_RS02010 0.89 +0.8 412,519 + AZOBR_RS02010 0.89 -1.0 412,520 - AZOBR_RS02010 0.89 +1.5 412,520 - AZOBR_RS02010 0.89 +0.6 412,520 - AZOBR_RS02010 0.89 +1.5 412,520 - AZOBR_RS02010 0.89 +0.8 412,520 - AZOBR_RS02010 0.89 -0.7 412,520 - AZOBR_RS02010 0.89 +1.7 412,520 - AZOBR_RS02010 0.89 -0.3 412,520 - AZOBR_RS02010 0.89 -0.1
Or see this region's nucleotide sequence