Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01715 and AZOBR_RS01720 are separated by 217 nucleotides AZOBR_RS01720 and AZOBR_RS01725 are separated by 140 nucleotides
AZOBR_RS01715: AZOBR_RS01715 - exlusion protein FxsA, at 349,741 to 350,241
_RS01715
AZOBR_RS01720: AZOBR_RS01720 - preprotein translocase subunit SecB, at 350,459 to 350,956
_RS01720
AZOBR_RS01725: AZOBR_RS01725 - transcription termination factor Rho, at 351,097 to 352,353
_RS01725
Position (kb) 351
352
353 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 350.222 kb on - strand at 350.399 kb on + strand at 350.400 kb on - strand at 350.531 kb on + strand, within AZOBR_RS01720 at 350.531 kb on + strand, within AZOBR_RS01720 at 350.532 kb on - strand, within AZOBR_RS01720 at 350.651 kb on + strand, within AZOBR_RS01720 at 350.651 kb on + strand, within AZOBR_RS01720 at 350.652 kb on - strand, within AZOBR_RS01720 at 350.724 kb on - strand, within AZOBR_RS01720 at 351.099 kb on - strand at 352.655 kb on + strand at 352.957 kb on + strand at 352.957 kb on + strand at 352.957 kb on + strand at 352.957 kb on + strand at 352.957 kb on + strand at 352.958 kb on - strand at 352.958 kb on - strand at 353.058 kb on - strand at 353.254 kb on + strand at 353.255 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 350,222 - +0.2 350,399 + +2.6 350,400 - +1.6 350,531 + AZOBR_RS01720 0.14 +2.7 350,531 + AZOBR_RS01720 0.14 +0.5 350,532 - AZOBR_RS01720 0.15 +1.8 350,651 + AZOBR_RS01720 0.39 +1.0 350,651 + AZOBR_RS01720 0.39 +1.5 350,652 - AZOBR_RS01720 0.39 +1.0 350,724 - AZOBR_RS01720 0.53 +2.0 351,099 - +1.0 352,655 + +0.2 352,957 + +4.5 352,957 + -2.2 352,957 + -2.3 352,957 + +0.6 352,957 + +0.1 352,958 - +0.3 352,958 - +0.1 353,058 - +0.3 353,254 + +0.5 353,255 - -0.2
Or see this region's nucleotide sequence