Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01390

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01385 and AZOBR_RS01390 are separated by 298 nucleotidesAZOBR_RS01390 and AZOBR_RS01400 are separated by 944 nucleotides AZOBR_RS01385: AZOBR_RS01385 - polynucleotide phosphorylase, at 286,680 to 288,800 _RS01385 AZOBR_RS01390: AZOBR_RS01390 - 30S ribosomal protein S15, at 289,099 to 289,368 _RS01390 AZOBR_RS01400: AZOBR_RS01400 - ribosome-binding factor A, at 290,313 to 290,897 _RS01400 Position (kb) 289 290Strain fitness (log2 ratio) -3 -2 -1 0 1at 288.848 kb on - strandat 288.919 kb on - strandat 288.975 kb on - strandat 288.975 kb on - strandat 289.787 kb on + strandat 289.787 kb on + strandat 289.788 kb on - strandat 289.917 kb on - strandat 290.100 kb on + strandat 290.101 kb on - strandat 290.124 kb on + strandat 290.125 kb on - strandat 290.125 kb on - strandat 290.315 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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288,848 - -3.5
288,919 - +0.8
288,975 - +0.7
288,975 - -0.2
289,787 + -0.3
289,787 + -0.3
289,788 - -1.1
289,917 - -0.6
290,100 + -0.8
290,101 - +1.0
290,124 + +0.2
290,125 - +0.6
290,125 - -0.9
290,315 - -1.1

Or see this region's nucleotide sequence