Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01280

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01275 and AZOBR_RS01280 are separated by 537 nucleotidesAZOBR_RS01280 and AZOBR_RS01285 are separated by 211 nucleotidesAZOBR_RS01285 and AZOBR_RS01290 are separated by 7 nucleotides AZOBR_RS01275: AZOBR_RS01275 - hypothetical protein, at 261,989 to 263,533 _RS01275 AZOBR_RS01280: AZOBR_RS01280 - hypothetical protein, at 264,071 to 265,975 _RS01280 AZOBR_RS01285: AZOBR_RS01285 - ubiquinone biosynthesis methyltransferase UbiE, at 266,187 to 266,933 _RS01285 AZOBR_RS01290: AZOBR_RS01290 - 2-octaprenylphenol hydroxylase, at 266,941 to 268,479 _RS01290 Position (kb) 264 265 266Strain fitness (log2 ratio) -3 -2 -1 0 1at 264.072 kb on + strandat 264.072 kb on + strandat 264.073 kb on - strandat 264.073 kb on - strandat 264.165 kb on + strandat 264.412 kb on - strand, within AZOBR_RS01280at 265.291 kb on - strand, within AZOBR_RS01280at 265.291 kb on - strand, within AZOBR_RS01280at 265.291 kb on - strand, within AZOBR_RS01280

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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264,072 + +0.8
264,072 + +0.3
264,073 - +1.6
264,073 - -0.8
264,165 + -1.6
264,412 - AZOBR_RS01280 0.18 -3.0
265,291 - AZOBR_RS01280 0.64 -2.9
265,291 - AZOBR_RS01280 0.64 -0.1
265,291 - AZOBR_RS01280 0.64 -0.8

Or see this region's nucleotide sequence