Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS00695 and AZOBR_RS00700 are separated by 101 nucleotides AZOBR_RS00700 and AZOBR_RS00705 are separated by 399 nucleotides
AZOBR_RS00695: AZOBR_RS00695 - transporter, at 137,157 to 138,806
_RS00695
AZOBR_RS00700: AZOBR_RS00700 - transporter, at 138,908 to 140,587
_RS00700
AZOBR_RS00705: AZOBR_RS00705 - cytochrome C biogenesis protein CcmA, at 140,987 to 141,628
_RS00705
Position (kb)
138
139
140
141 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 138.316 kb on + strand, within AZOBR_RS00695 at 138.316 kb on + strand, within AZOBR_RS00695 at 138.317 kb on - strand, within AZOBR_RS00695 at 138.592 kb on + strand, within AZOBR_RS00695 at 138.592 kb on + strand, within AZOBR_RS00695 at 138.592 kb on + strand, within AZOBR_RS00695 at 138.593 kb on - strand, within AZOBR_RS00695 at 138.735 kb on + strand at 138.735 kb on + strand at 138.735 kb on + strand at 138.735 kb on + strand at 138.736 kb on - strand at 138.909 kb on + strand at 138.910 kb on - strand at 138.910 kb on - strand at 138.959 kb on - strand at 138.964 kb on + strand at 138.965 kb on - strand at 138.969 kb on + strand at 138.969 kb on + strand at 139.080 kb on + strand, within AZOBR_RS00700 at 139.080 kb on + strand, within AZOBR_RS00700 at 139.081 kb on - strand, within AZOBR_RS00700 at 139.389 kb on + strand, within AZOBR_RS00700 at 139.389 kb on + strand, within AZOBR_RS00700 at 139.389 kb on + strand, within AZOBR_RS00700 at 139.389 kb on + strand, within AZOBR_RS00700 at 139.389 kb on + strand, within AZOBR_RS00700 at 139.390 kb on - strand, within AZOBR_RS00700 at 139.390 kb on - strand, within AZOBR_RS00700 at 139.390 kb on - strand, within AZOBR_RS00700 at 139.390 kb on - strand, within AZOBR_RS00700 at 139.615 kb on - strand, within AZOBR_RS00700 at 140.343 kb on + strand, within AZOBR_RS00700 at 140.343 kb on + strand, within AZOBR_RS00700 at 140.344 kb on - strand, within AZOBR_RS00700 at 140.344 kb on - strand, within AZOBR_RS00700 at 140.633 kb on - strand at 140.677 kb on - strand at 140.787 kb on - strand at 140.953 kb on + strand at 140.953 kb on + strand at 140.954 kb on - strand at 140.954 kb on - strand at 140.954 kb on - strand at 140.955 kb on + strand at 140.955 kb on + strand at 140.955 kb on + strand at 140.955 kb on + strand at 140.955 kb on + strand at 140.955 kb on + strand at 140.956 kb on - strand at 140.956 kb on - strand at 140.956 kb on - strand at 140.956 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 138,316 + AZOBR_RS00695 0.70 +0.8 138,316 + AZOBR_RS00695 0.70 +0.3 138,317 - AZOBR_RS00695 0.70 -4.3 138,592 + AZOBR_RS00695 0.87 -0.5 138,592 + AZOBR_RS00695 0.87 +1.6 138,592 + AZOBR_RS00695 0.87 -0.2 138,593 - AZOBR_RS00695 0.87 +2.6 138,735 + -2.6 138,735 + +4.3 138,735 + -0.5 138,735 + +0.5 138,736 - -1.1 138,909 + -0.4 138,910 - -1.6 138,910 - -0.5 138,959 - -0.3 138,964 + -1.7 138,965 - +0.7 138,969 + -1.0 138,969 + +0.9 139,080 + AZOBR_RS00700 0.10 -2.6 139,080 + AZOBR_RS00700 0.10 +0.0 139,081 - AZOBR_RS00700 0.10 -0.2 139,389 + AZOBR_RS00700 0.29 +0.2 139,389 + AZOBR_RS00700 0.29 +0.2 139,389 + AZOBR_RS00700 0.29 +0.2 139,389 + AZOBR_RS00700 0.29 -1.5 139,389 + AZOBR_RS00700 0.29 +0.3 139,390 - AZOBR_RS00700 0.29 -0.7 139,390 - AZOBR_RS00700 0.29 +1.5 139,390 - AZOBR_RS00700 0.29 -0.7 139,390 - AZOBR_RS00700 0.29 +0.8 139,615 - AZOBR_RS00700 0.42 -0.5 140,343 + AZOBR_RS00700 0.85 +0.6 140,343 + AZOBR_RS00700 0.85 -1.9 140,344 - AZOBR_RS00700 0.85 -0.7 140,344 - AZOBR_RS00700 0.85 +0.8 140,633 - -0.0 140,677 - -3.6 140,787 - -1.0 140,953 + +3.0 140,953 + +0.5 140,954 - -0.5 140,954 - +0.8 140,954 - -4.8 140,955 + +1.0 140,955 + +0.5 140,955 + +0.0 140,955 + -0.6 140,955 + +0.2 140,955 + +1.7 140,956 - -1.2 140,956 - -2.0 140,956 - -1.7 140,956 - +0.3
Or see this region's nucleotide sequence