Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00570

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00565 and AZOBR_RS00570 are separated by 223 nucleotidesAZOBR_RS00570 and AZOBR_RS00575 are separated by 61 nucleotidesAZOBR_RS00575 and AZOBR_RS00580 overlap by 4 nucleotides AZOBR_RS00565: AZOBR_RS00565 - ferredoxin--NADP reductase, at 113,059 to 114,081 _RS00565 AZOBR_RS00570: AZOBR_RS00570 - hypothetical protein, at 114,305 to 114,736 _RS00570 AZOBR_RS00575: AZOBR_RS00575 - ATPase, at 114,798 to 115,256 _RS00575 AZOBR_RS00580: AZOBR_RS00580 - aminoglycoside phosphotransferase, at 115,253 to 116,266 _RS00580 Position (kb) 114 115Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 114.419 kb on + strand, within AZOBR_RS00570at 114.539 kb on + strand, within AZOBR_RS00570at 114.539 kb on + strand, within AZOBR_RS00570at 115.302 kb on + strandat 115.353 kb on - strandat 115.583 kb on + strand, within AZOBR_RS00580at 115.712 kb on + strand, within AZOBR_RS00580at 115.712 kb on + strand, within AZOBR_RS00580at 115.712 kb on + strand, within AZOBR_RS00580at 115.712 kb on + strand, within AZOBR_RS00580at 115.712 kb on + strand, within AZOBR_RS00580at 115.713 kb on - strand, within AZOBR_RS00580at 115.713 kb on - strand, within AZOBR_RS00580at 115.713 kb on - strand, within AZOBR_RS00580at 115.713 kb on - strand, within AZOBR_RS00580at 115.713 kb on - strand, within AZOBR_RS00580at 115.713 kb on - strand, within AZOBR_RS00580at 115.713 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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114,419 + AZOBR_RS00570 0.26 -4.2
114,539 + AZOBR_RS00570 0.54 -0.2
114,539 + AZOBR_RS00570 0.54 -0.9
115,302 + +0.8
115,353 - +0.0
115,583 + AZOBR_RS00580 0.33 -0.7
115,712 + AZOBR_RS00580 0.45 +1.1
115,712 + AZOBR_RS00580 0.45 +0.3
115,712 + AZOBR_RS00580 0.45 -0.7
115,712 + AZOBR_RS00580 0.45 +0.7
115,712 + AZOBR_RS00580 0.45 +0.0
115,713 - AZOBR_RS00580 0.45 +0.3
115,713 - AZOBR_RS00580 0.45 -3.5
115,713 - AZOBR_RS00580 0.45 +1.3
115,713 - AZOBR_RS00580 0.45 -0.3
115,713 - AZOBR_RS00580 0.45 +0.8
115,713 - AZOBR_RS00580 0.45 -0.1
115,713 - +1.6

Or see this region's nucleotide sequence