Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00225

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS00215 and AZOBR_RS00220 are separated by 81 nucleotidesAZOBR_RS00220 and AZOBR_RS00225 are separated by 121 nucleotidesAZOBR_RS00225 and AZOBR_RS00230 are separated by 234 nucleotides AZOBR_RS00215: AZOBR_RS00215 - MFS transporter, at 35,788 to 37,098 _RS00215 AZOBR_RS00220: AZOBR_RS00220 - hypothetical protein, at 37,180 to 37,431 _RS00220 AZOBR_RS00225: AZOBR_RS00225 - purine biosynthesis protein purH, at 37,553 to 39,157 _RS00225 AZOBR_RS00230: AZOBR_RS00230 - hypothetical protein, at 39,392 to 41,044 _RS00230 Position (kb) 37 38 39 40Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 37.033 kb on - strandat 37.125 kb on + strandat 37.125 kb on + strandat 37.429 kb on + strandat 37.429 kb on + strandat 37.429 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
37,033 - -1.8
37,125 + -1.0
37,125 + +0.7
37,429 + -3.9
37,429 + -1.5
37,429 + -1.7

Or see this region's nucleotide sequence