Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22090

Experiment: soil EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22080 and ABZR87_RS22085 are separated by 281 nucleotidesABZR87_RS22085 and ABZR87_RS22090 are separated by 37 nucleotidesABZR87_RS22090 and ABZR87_RS22095 are separated by 10 nucleotidesABZR87_RS22095 and ABZR87_RS22100 overlap by 16 nucleotides ABZR87_RS22080: ABZR87_RS22080 - flagellar basal-body MS-ring/collar protein FliF, at 1,322,300 to 1,324,135 _RS22080 ABZR87_RS22085: ABZR87_RS22085 - flagellar hook-basal body complex protein FliE, at 1,324,417 to 1,324,758 _RS22085 ABZR87_RS22090: ABZR87_RS22090 - glycosyltransferase family 2 protein, at 1,324,796 to 1,325,905 _RS22090 ABZR87_RS22095: ABZR87_RS22095 - glucose-1-phosphate cytidylyltransferase, at 1,325,916 to 1,326,689 _RS22095 ABZR87_RS22100: ABZR87_RS22100 - CDP-glucose 4,6-dehydratase, at 1,326,674 to 1,327,780 _RS22100 Position (kb) 1324 1325 1326Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1323.897 kb on + strand, within ABZR87_RS22080at 1323.897 kb on + strand, within ABZR87_RS22080at 1323.898 kb on - strand, within ABZR87_RS22080at 1323.898 kb on - strand, within ABZR87_RS22080at 1323.898 kb on - strand, within ABZR87_RS22080at 1323.910 kb on - strand, within ABZR87_RS22080at 1324.081 kb on + strandat 1324.082 kb on - strandat 1324.155 kb on + strandat 1324.155 kb on + strandat 1324.155 kb on + strandat 1324.316 kb on + strandat 1324.391 kb on + strandat 1324.391 kb on + strandat 1324.391 kb on + strandat 1324.392 kb on - strandat 1324.422 kb on + strandat 1324.423 kb on - strandat 1324.425 kb on + strandat 1324.425 kb on + strandat 1324.425 kb on + strandat 1324.426 kb on - strandat 1324.426 kb on - strandat 1324.426 kb on - strandat 1324.426 kb on - strandat 1324.729 kb on + strandat 1324.730 kb on - strandat 1325.237 kb on + strand, within ABZR87_RS22090at 1325.237 kb on + strand, within ABZR87_RS22090at 1325.237 kb on + strand, within ABZR87_RS22090at 1325.237 kb on + strand, within ABZR87_RS22090at 1325.238 kb on - strand, within ABZR87_RS22090at 1325.238 kb on - strand, within ABZR87_RS22090at 1325.238 kb on - strand, within ABZR87_RS22090at 1325.316 kb on - strand, within ABZR87_RS22090at 1325.400 kb on - strand, within ABZR87_RS22090at 1325.408 kb on + strand, within ABZR87_RS22090at 1325.408 kb on + strand, within ABZR87_RS22090at 1325.409 kb on - strand, within ABZR87_RS22090at 1325.409 kb on - strand, within ABZR87_RS22090at 1325.409 kb on - strand, within ABZR87_RS22090at 1325.409 kb on - strand, within ABZR87_RS22090at 1325.409 kb on - strand, within ABZR87_RS22090at 1325.465 kb on + strand, within ABZR87_RS22090at 1325.465 kb on + strand, within ABZR87_RS22090at 1325.466 kb on - strand, within ABZR87_RS22090at 1325.466 kb on - strand, within ABZR87_RS22090at 1325.466 kb on - strand, within ABZR87_RS22090at 1325.466 kb on - strand, within ABZR87_RS22090at 1325.468 kb on + strand, within ABZR87_RS22090at 1325.469 kb on - strand, within ABZR87_RS22090at 1325.469 kb on - strand, within ABZR87_RS22090at 1325.524 kb on + strand, within ABZR87_RS22090at 1325.524 kb on + strand, within ABZR87_RS22090at 1325.524 kb on + strand, within ABZR87_RS22090at 1325.524 kb on + strand, within ABZR87_RS22090at 1325.524 kb on + strand, within ABZR87_RS22090at 1325.524 kb on + strand, within ABZR87_RS22090at 1325.525 kb on - strand, within ABZR87_RS22090at 1325.525 kb on - strand, within ABZR87_RS22090at 1325.525 kb on - strand, within ABZR87_RS22090at 1325.525 kb on - strand, within ABZR87_RS22090at 1325.525 kb on - strand, within ABZR87_RS22090at 1325.621 kb on + strand, within ABZR87_RS22090at 1325.621 kb on + strand, within ABZR87_RS22090at 1325.621 kb on + strand, within ABZR87_RS22090at 1325.627 kb on + strand, within ABZR87_RS22090at 1325.627 kb on + strand, within ABZR87_RS22090at 1325.627 kb on + strand, within ABZR87_RS22090at 1325.627 kb on + strand, within ABZR87_RS22090at 1325.627 kb on + strand, within ABZR87_RS22090at 1325.628 kb on - strand, within ABZR87_RS22090at 1325.795 kb on + strandat 1325.795 kb on + strandat 1325.796 kb on - strandat 1325.796 kb on - strandat 1325.810 kb on + strandat 1325.907 kb on + strandat 1326.036 kb on + strand, within ABZR87_RS22095at 1326.036 kb on + strand, within ABZR87_RS22095at 1326.037 kb on - strand, within ABZR87_RS22095at 1326.037 kb on - strand, within ABZR87_RS22095at 1326.037 kb on - strand, within ABZR87_RS22095at 1326.078 kb on + strand, within ABZR87_RS22095at 1326.079 kb on - strand, within ABZR87_RS22095at 1326.079 kb on - strand, within ABZR87_RS22095at 1326.087 kb on + strand, within ABZR87_RS22095at 1326.087 kb on + strand, within ABZR87_RS22095at 1326.088 kb on - strand, within ABZR87_RS22095at 1326.088 kb on - strand, within ABZR87_RS22095at 1326.102 kb on + strand, within ABZR87_RS22095at 1326.102 kb on + strand, within ABZR87_RS22095at 1326.102 kb on + strand, within ABZR87_RS22095at 1326.103 kb on - strand, within ABZR87_RS22095at 1326.103 kb on - strand, within ABZR87_RS22095at 1326.103 kb on - strand, within ABZR87_RS22095at 1326.114 kb on + strand, within ABZR87_RS22095at 1326.114 kb on + strand, within ABZR87_RS22095at 1326.115 kb on - strand, within ABZR87_RS22095at 1326.115 kb on - strand, within ABZR87_RS22095at 1326.115 kb on - strand, within ABZR87_RS22095at 1326.146 kb on + strand, within ABZR87_RS22095at 1326.146 kb on + strand, within ABZR87_RS22095at 1326.147 kb on - strand, within ABZR87_RS22095at 1326.261 kb on + strand, within ABZR87_RS22095at 1326.262 kb on - strand, within ABZR87_RS22095at 1326.513 kb on + strand, within ABZR87_RS22095at 1326.513 kb on + strand, within ABZR87_RS22095at 1326.513 kb on + strand, within ABZR87_RS22095at 1326.513 kb on + strand, within ABZR87_RS22095at 1326.513 kb on + strand, within ABZR87_RS22095at 1326.513 kb on + strand, within ABZR87_RS22095at 1326.514 kb on - strand, within ABZR87_RS22095at 1326.514 kb on - strand, within ABZR87_RS22095at 1326.514 kb on - strand, within ABZR87_RS22095at 1326.804 kb on - strand, within ABZR87_RS22100at 1326.838 kb on + strand, within ABZR87_RS22100at 1326.838 kb on + strand, within ABZR87_RS22100

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB
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1,323,897 + ABZR87_RS22080 0.87 +0.8
1,323,897 + ABZR87_RS22080 0.87 +0.7
1,323,898 - ABZR87_RS22080 0.87 +1.6
1,323,898 - ABZR87_RS22080 0.87 +0.7
1,323,898 - ABZR87_RS22080 0.87 +0.8
1,323,910 - ABZR87_RS22080 0.88 +1.8
1,324,081 + +0.8
1,324,082 - +0.4
1,324,155 + +2.0
1,324,155 + +2.0
1,324,155 + +1.4
1,324,316 + -0.2
1,324,391 + -0.0
1,324,391 + -0.1
1,324,391 + +0.9
1,324,392 - +0.1
1,324,422 + +0.9
1,324,423 - +0.8
1,324,425 + +0.8
1,324,425 + +1.8
1,324,425 + -0.3
1,324,426 - -1.7
1,324,426 - +1.1
1,324,426 - +1.8
1,324,426 - +0.1
1,324,729 + -1.5
1,324,730 - +1.1
1,325,237 + ABZR87_RS22090 0.40 -1.5
1,325,237 + ABZR87_RS22090 0.40 +1.0
1,325,237 + ABZR87_RS22090 0.40 +0.5
1,325,237 + ABZR87_RS22090 0.40 -0.0
1,325,238 - ABZR87_RS22090 0.40 +0.1
1,325,238 - ABZR87_RS22090 0.40 +0.6
1,325,238 - ABZR87_RS22090 0.40 -1.1
1,325,316 - ABZR87_RS22090 0.47 +0.3
1,325,400 - ABZR87_RS22090 0.54 +0.3
1,325,408 + ABZR87_RS22090 0.55 -0.8
1,325,408 + ABZR87_RS22090 0.55 +1.2
1,325,409 - ABZR87_RS22090 0.55 +0.3
1,325,409 - ABZR87_RS22090 0.55 +1.0
1,325,409 - ABZR87_RS22090 0.55 +0.2
1,325,409 - ABZR87_RS22090 0.55 +0.8
1,325,409 - ABZR87_RS22090 0.55 +1.0
1,325,465 + ABZR87_RS22090 0.60 -0.4
1,325,465 + ABZR87_RS22090 0.60 -0.3
1,325,466 - ABZR87_RS22090 0.60 +1.1
1,325,466 - ABZR87_RS22090 0.60 +0.8
1,325,466 - ABZR87_RS22090 0.60 -0.4
1,325,466 - ABZR87_RS22090 0.60 +0.8
1,325,468 + ABZR87_RS22090 0.61 -0.5
1,325,469 - ABZR87_RS22090 0.61 -2.0
1,325,469 - ABZR87_RS22090 0.61 -0.6
1,325,524 + ABZR87_RS22090 0.66 -0.9
1,325,524 + ABZR87_RS22090 0.66 -0.4
1,325,524 + ABZR87_RS22090 0.66 +0.8
1,325,524 + ABZR87_RS22090 0.66 +1.6
1,325,524 + ABZR87_RS22090 0.66 +1.5
1,325,524 + ABZR87_RS22090 0.66 +1.2
1,325,525 - ABZR87_RS22090 0.66 +0.5
1,325,525 - ABZR87_RS22090 0.66 +1.4
1,325,525 - ABZR87_RS22090 0.66 +1.1
1,325,525 - ABZR87_RS22090 0.66 -0.6
1,325,525 - ABZR87_RS22090 0.66 +0.4
1,325,621 + ABZR87_RS22090 0.74 +0.6
1,325,621 + ABZR87_RS22090 0.74 +0.6
1,325,621 + ABZR87_RS22090 0.74 -4.0
1,325,627 + ABZR87_RS22090 0.75 +0.7
1,325,627 + ABZR87_RS22090 0.75 +0.6
1,325,627 + ABZR87_RS22090 0.75 -0.4
1,325,627 + ABZR87_RS22090 0.75 -0.0
1,325,627 + ABZR87_RS22090 0.75 -0.6
1,325,628 - ABZR87_RS22090 0.75 -1.6
1,325,795 + +0.8
1,325,795 + +0.2
1,325,796 - +0.2
1,325,796 - +0.0
1,325,810 + +0.3
1,325,907 + +0.5
1,326,036 + ABZR87_RS22095 0.16 -0.0
1,326,036 + ABZR87_RS22095 0.16 +0.9
1,326,037 - ABZR87_RS22095 0.16 +0.4
1,326,037 - ABZR87_RS22095 0.16 +0.4
1,326,037 - ABZR87_RS22095 0.16 -0.4
1,326,078 + ABZR87_RS22095 0.21 +0.6
1,326,079 - ABZR87_RS22095 0.21 +2.5
1,326,079 - ABZR87_RS22095 0.21 +0.1
1,326,087 + ABZR87_RS22095 0.22 +1.3
1,326,087 + ABZR87_RS22095 0.22 +1.0
1,326,088 - ABZR87_RS22095 0.22 -0.3
1,326,088 - ABZR87_RS22095 0.22 -0.7
1,326,102 + ABZR87_RS22095 0.24 +1.0
1,326,102 + ABZR87_RS22095 0.24 +1.4
1,326,102 + ABZR87_RS22095 0.24 +0.5
1,326,103 - ABZR87_RS22095 0.24 +0.8
1,326,103 - ABZR87_RS22095 0.24 -1.0
1,326,103 - ABZR87_RS22095 0.24 +0.5
1,326,114 + ABZR87_RS22095 0.26 +0.7
1,326,114 + ABZR87_RS22095 0.26 +2.6
1,326,115 - ABZR87_RS22095 0.26 +0.8
1,326,115 - ABZR87_RS22095 0.26 +1.0
1,326,115 - ABZR87_RS22095 0.26 -0.1
1,326,146 + ABZR87_RS22095 0.30 -0.9
1,326,146 + ABZR87_RS22095 0.30 +0.7
1,326,147 - ABZR87_RS22095 0.30 -0.2
1,326,261 + ABZR87_RS22095 0.45 -1.3
1,326,262 - ABZR87_RS22095 0.45 -0.1
1,326,513 + ABZR87_RS22095 0.77 -0.3
1,326,513 + ABZR87_RS22095 0.77 -0.2
1,326,513 + ABZR87_RS22095 0.77 -0.4
1,326,513 + ABZR87_RS22095 0.77 -3.8
1,326,513 + ABZR87_RS22095 0.77 +3.2
1,326,513 + ABZR87_RS22095 0.77 +0.7
1,326,514 - ABZR87_RS22095 0.77 +1.3
1,326,514 - ABZR87_RS22095 0.77 +0.2
1,326,514 - ABZR87_RS22095 0.77 -0.1
1,326,804 - ABZR87_RS22100 0.12 +1.5
1,326,838 + ABZR87_RS22100 0.15 -2.5
1,326,838 + ABZR87_RS22100 0.15 +1.0

Or see this region's nucleotide sequence