Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21950

Experiment: soil EcoFAB sample 2; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS21940 and ABZR87_RS21945 overlap by 1 nucleotidesABZR87_RS21945 and ABZR87_RS21950 overlap by 8 nucleotidesABZR87_RS21950 and ABZR87_RS21955 are separated by 62 nucleotidesABZR87_RS21955 and ABZR87_RS21960 are separated by 3 nucleotides ABZR87_RS21940: ABZR87_RS21940 - hypothetical protein, at 1,297,635 to 1,298,147 _RS21940 ABZR87_RS21945: ABZR87_RS21945 - glycoside hydrolase family 19 protein, at 1,298,147 to 1,298,710 _RS21945 ABZR87_RS21950: ABZR87_RS21950 - hypothetical protein, at 1,298,703 to 1,299,113 _RS21950 ABZR87_RS21955: ABZR87_RS21955 - hypothetical protein, at 1,299,176 to 1,299,739 _RS21955 ABZR87_RS21960: ABZR87_RS21960 - hypothetical protein, at 1,299,743 to 1,301,398 _RS21960 Position (kb) 1298 1299 1300Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1297.879 kb on - strand, within ABZR87_RS21940at 1298.397 kb on + strand, within ABZR87_RS21945at 1298.439 kb on + strand, within ABZR87_RS21945at 1298.440 kb on - strand, within ABZR87_RS21945at 1298.490 kb on + strand, within ABZR87_RS21945at 1298.491 kb on - strand, within ABZR87_RS21945at 1298.532 kb on + strand, within ABZR87_RS21945at 1298.532 kb on + strand, within ABZR87_RS21945at 1298.532 kb on + strand, within ABZR87_RS21945at 1298.532 kb on + strand, within ABZR87_RS21945at 1298.533 kb on - strand, within ABZR87_RS21945at 1298.720 kb on + strandat 1298.720 kb on + strandat 1298.721 kb on - strandat 1298.836 kb on + strand, within ABZR87_RS21950at 1298.836 kb on + strand, within ABZR87_RS21950at 1298.837 kb on - strand, within ABZR87_RS21950at 1298.837 kb on - strand, within ABZR87_RS21950at 1298.837 kb on - strand, within ABZR87_RS21950at 1298.896 kb on + strand, within ABZR87_RS21950at 1298.896 kb on + strand, within ABZR87_RS21950at 1299.099 kb on - strandat 1299.177 kb on + strandat 1299.177 kb on + strandat 1299.177 kb on + strandat 1299.178 kb on - strandat 1299.244 kb on - strand, within ABZR87_RS21955at 1299.438 kb on + strand, within ABZR87_RS21955at 1299.438 kb on + strand, within ABZR87_RS21955at 1299.438 kb on + strand, within ABZR87_RS21955at 1299.438 kb on + strand, within ABZR87_RS21955at 1299.438 kb on + strand, within ABZR87_RS21955at 1299.439 kb on - strand, within ABZR87_RS21955at 1299.439 kb on - strand, within ABZR87_RS21955at 1299.439 kb on - strand, within ABZR87_RS21955at 1299.439 kb on - strand, within ABZR87_RS21955at 1299.442 kb on + strand, within ABZR87_RS21955at 1299.442 kb on + strand, within ABZR87_RS21955at 1299.442 kb on + strand, within ABZR87_RS21955at 1299.443 kb on - strand, within ABZR87_RS21955at 1299.443 kb on - strand, within ABZR87_RS21955at 1299.614 kb on - strand, within ABZR87_RS21955at 1299.637 kb on + strand, within ABZR87_RS21955at 1299.682 kb on + strand, within ABZR87_RS21955at 1299.690 kb on + strandat 1299.690 kb on + strandat 1299.690 kb on + strandat 1299.691 kb on - strandat 1299.691 kb on - strandat 1299.691 kb on - strandat 1299.720 kb on + strandat 1299.721 kb on - strandat 1299.721 kb on - strandat 1299.721 kb on - strandat 1299.745 kb on - strandat 1299.810 kb on - strandat 1299.852 kb on + strandat 1299.852 kb on + strandat 1299.853 kb on - strandat 1299.859 kb on + strandat 1299.860 kb on - strandat 1299.860 kb on - strandat 1299.891 kb on + strandat 1299.891 kb on + strandat 1299.924 kb on + strand, within ABZR87_RS21960at 1299.925 kb on - strand, within ABZR87_RS21960at 1299.925 kb on - strand, within ABZR87_RS21960at 1299.933 kb on + strand, within ABZR87_RS21960at 1299.943 kb on + strand, within ABZR87_RS21960at 1299.943 kb on + strand, within ABZR87_RS21960at 1299.944 kb on - strand, within ABZR87_RS21960at 1299.944 kb on - strand, within ABZR87_RS21960at 1299.944 kb on - strand, within ABZR87_RS21960at 1299.944 kb on - strand, within ABZR87_RS21960at 1299.944 kb on - strand, within ABZR87_RS21960at 1300.072 kb on + strand, within ABZR87_RS21960at 1300.073 kb on - strand, within ABZR87_RS21960at 1300.073 kb on - strand, within ABZR87_RS21960at 1300.073 kb on - strand, within ABZR87_RS21960

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB
remove
1,297,879 - ABZR87_RS21940 0.48 -3.1
1,298,397 + ABZR87_RS21945 0.44 -0.1
1,298,439 + ABZR87_RS21945 0.52 +0.2
1,298,440 - ABZR87_RS21945 0.52 -0.3
1,298,490 + ABZR87_RS21945 0.61 +1.5
1,298,491 - ABZR87_RS21945 0.61 -3.4
1,298,532 + ABZR87_RS21945 0.68 +1.0
1,298,532 + ABZR87_RS21945 0.68 +1.1
1,298,532 + ABZR87_RS21945 0.68 +0.7
1,298,532 + ABZR87_RS21945 0.68 -2.3
1,298,533 - ABZR87_RS21945 0.68 +1.9
1,298,720 + -0.6
1,298,720 + +0.6
1,298,721 - -1.3
1,298,836 + ABZR87_RS21950 0.32 -1.8
1,298,836 + ABZR87_RS21950 0.32 -2.2
1,298,837 - ABZR87_RS21950 0.33 -4.2
1,298,837 - ABZR87_RS21950 0.33 -4.2
1,298,837 - ABZR87_RS21950 0.33 -2.3
1,298,896 + ABZR87_RS21950 0.47 -1.0
1,298,896 + ABZR87_RS21950 0.47 -2.0
1,299,099 - -2.5
1,299,177 + -1.0
1,299,177 + +0.1
1,299,177 + -0.6
1,299,178 - -2.2
1,299,244 - ABZR87_RS21955 0.12 -2.8
1,299,438 + ABZR87_RS21955 0.46 -1.1
1,299,438 + ABZR87_RS21955 0.46 -1.6
1,299,438 + ABZR87_RS21955 0.46 +0.2
1,299,438 + ABZR87_RS21955 0.46 -1.1
1,299,438 + ABZR87_RS21955 0.46 +0.3
1,299,439 - ABZR87_RS21955 0.47 -3.5
1,299,439 - ABZR87_RS21955 0.47 -4.5
1,299,439 - ABZR87_RS21955 0.47 -1.6
1,299,439 - ABZR87_RS21955 0.47 -2.8
1,299,442 + ABZR87_RS21955 0.47 -3.3
1,299,442 + ABZR87_RS21955 0.47 -0.3
1,299,442 + ABZR87_RS21955 0.47 -1.1
1,299,443 - ABZR87_RS21955 0.47 -2.0
1,299,443 - ABZR87_RS21955 0.47 -1.7
1,299,614 - ABZR87_RS21955 0.78 -1.0
1,299,637 + ABZR87_RS21955 0.82 -0.1
1,299,682 + ABZR87_RS21955 0.90 -0.7
1,299,690 + -0.3
1,299,690 + +0.2
1,299,690 + +0.3
1,299,691 - -0.3
1,299,691 - -2.1
1,299,691 - -1.2
1,299,720 + -1.4
1,299,721 - -0.9
1,299,721 - -0.0
1,299,721 - -2.1
1,299,745 - -4.8
1,299,810 - -1.9
1,299,852 + -0.7
1,299,852 + +0.4
1,299,853 - -2.8
1,299,859 + +0.3
1,299,860 - -1.9
1,299,860 - -3.4
1,299,891 + +0.4
1,299,891 + -2.1
1,299,924 + ABZR87_RS21960 0.11 +0.6
1,299,925 - ABZR87_RS21960 0.11 -2.9
1,299,925 - ABZR87_RS21960 0.11 -1.6
1,299,933 + ABZR87_RS21960 0.11 -0.4
1,299,943 + ABZR87_RS21960 0.12 +1.2
1,299,943 + ABZR87_RS21960 0.12 +0.7
1,299,944 - ABZR87_RS21960 0.12 -1.7
1,299,944 - ABZR87_RS21960 0.12 -1.4
1,299,944 - ABZR87_RS21960 0.12 -2.0
1,299,944 - ABZR87_RS21960 0.12 -1.7
1,299,944 - ABZR87_RS21960 0.12 -1.9
1,300,072 + ABZR87_RS21960 0.20 -2.0
1,300,073 - ABZR87_RS21960 0.20 -3.3
1,300,073 - ABZR87_RS21960 0.20 -2.3
1,300,073 - ABZR87_RS21960 0.20 -4.1

Or see this region's nucleotide sequence