Experiment: soil EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21730 and ABZR87_RS21735 are separated by 9 nucleotides ABZR87_RS21735 and ABZR87_RS21740 are separated by 252 nucleotides ABZR87_RS21740 and ABZR87_RS21745 are separated by 10 nucleotides
ABZR87_RS21730: ABZR87_RS21730 - heavy metal sensor histidine kinase, at 1,259,784 to 1,261,226
_RS21730
ABZR87_RS21735: ABZR87_RS21735 - DUF2917 domain-containing protein, at 1,261,236 to 1,261,598
_RS21735
ABZR87_RS21740: ABZR87_RS21740 - TauD/TfdA family dioxygenase, at 1,261,851 to 1,262,807
_RS21740
ABZR87_RS21745: ABZR87_RS21745 - M20 family peptidase, at 1,262,818 to 1,264,344
_RS21745
Position (kb) 1261
1262
1263 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1261.266 kb on - strand at 1261.331 kb on + strand, within ABZR87_RS21735 at 1261.778 kb on - strand at 1261.816 kb on + strand at 1261.816 kb on + strand at 1261.816 kb on + strand at 1261.817 kb on - strand at 1261.903 kb on + strand at 1261.922 kb on + strand at 1261.923 kb on - strand at 1261.989 kb on + strand, within ABZR87_RS21740 at 1262.007 kb on + strand, within ABZR87_RS21740 at 1262.007 kb on + strand, within ABZR87_RS21740 at 1262.007 kb on + strand, within ABZR87_RS21740 at 1262.008 kb on - strand, within ABZR87_RS21740 at 1262.008 kb on - strand, within ABZR87_RS21740 at 1262.008 kb on - strand, within ABZR87_RS21740 at 1262.008 kb on - strand, within ABZR87_RS21740 at 1262.283 kb on + strand, within ABZR87_RS21740 at 1262.283 kb on + strand, within ABZR87_RS21740 at 1262.347 kb on - strand, within ABZR87_RS21740 at 1262.349 kb on + strand, within ABZR87_RS21740 at 1262.349 kb on + strand, within ABZR87_RS21740 at 1262.349 kb on + strand, within ABZR87_RS21740 at 1262.350 kb on - strand, within ABZR87_RS21740 at 1262.350 kb on - strand, within ABZR87_RS21740 at 1262.350 kb on - strand, within ABZR87_RS21740 at 1262.355 kb on + strand, within ABZR87_RS21740 at 1262.427 kb on + strand, within ABZR87_RS21740 at 1262.427 kb on + strand, within ABZR87_RS21740 at 1262.427 kb on + strand, within ABZR87_RS21740 at 1262.428 kb on - strand, within ABZR87_RS21740 at 1262.428 kb on - strand, within ABZR87_RS21740 at 1262.646 kb on + strand, within ABZR87_RS21740 at 1262.647 kb on - strand, within ABZR87_RS21740 at 1262.647 kb on - strand, within ABZR87_RS21740 at 1262.816 kb on + strand at 1262.852 kb on + strand at 1262.853 kb on - strand at 1263.068 kb on + strand, within ABZR87_RS21745 at 1263.068 kb on + strand, within ABZR87_RS21745 at 1263.068 kb on + strand, within ABZR87_RS21745 at 1263.069 kb on - strand, within ABZR87_RS21745 at 1263.261 kb on + strand, within ABZR87_RS21745 at 1263.261 kb on + strand, within ABZR87_RS21745
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB remove 1,261,266 - +0.5 1,261,331 + ABZR87_RS21735 0.26 -0.1 1,261,778 - +0.1 1,261,816 + -0.8 1,261,816 + -2.6 1,261,816 + +0.8 1,261,817 - +0.5 1,261,903 + -1.3 1,261,922 + -0.6 1,261,923 - +0.9 1,261,989 + ABZR87_RS21740 0.14 +0.2 1,262,007 + ABZR87_RS21740 0.16 -0.1 1,262,007 + ABZR87_RS21740 0.16 +0.4 1,262,007 + ABZR87_RS21740 0.16 -0.8 1,262,008 - ABZR87_RS21740 0.16 -1.0 1,262,008 - ABZR87_RS21740 0.16 +2.0 1,262,008 - ABZR87_RS21740 0.16 +1.1 1,262,008 - ABZR87_RS21740 0.16 -0.7 1,262,283 + ABZR87_RS21740 0.45 -1.6 1,262,283 + ABZR87_RS21740 0.45 -0.1 1,262,347 - ABZR87_RS21740 0.52 -0.0 1,262,349 + ABZR87_RS21740 0.52 -2.8 1,262,349 + ABZR87_RS21740 0.52 -1.2 1,262,349 + ABZR87_RS21740 0.52 -1.9 1,262,350 - ABZR87_RS21740 0.52 +0.0 1,262,350 - ABZR87_RS21740 0.52 -2.3 1,262,350 - ABZR87_RS21740 0.52 -0.1 1,262,355 + ABZR87_RS21740 0.53 +0.1 1,262,427 + ABZR87_RS21740 0.60 -2.2 1,262,427 + ABZR87_RS21740 0.60 +0.4 1,262,427 + ABZR87_RS21740 0.60 +1.6 1,262,428 - ABZR87_RS21740 0.60 -3.4 1,262,428 - ABZR87_RS21740 0.60 -1.1 1,262,646 + ABZR87_RS21740 0.83 -0.2 1,262,647 - ABZR87_RS21740 0.83 +0.0 1,262,647 - ABZR87_RS21740 0.83 +0.9 1,262,816 + -1.9 1,262,852 + -1.1 1,262,853 - +0.4 1,263,068 + ABZR87_RS21745 0.16 -1.3 1,263,068 + ABZR87_RS21745 0.16 -1.0 1,263,068 + ABZR87_RS21745 0.16 +1.7 1,263,069 - ABZR87_RS21745 0.16 -0.3 1,263,261 + ABZR87_RS21745 0.29 -1.8 1,263,261 + ABZR87_RS21745 0.29 +0.2
Or see this region's nucleotide sequence