Experiment: soil EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20030 and ABZR87_RS20035 are separated by 253 nucleotides ABZR87_RS20035 and ABZR87_RS20040 are separated by 28 nucleotides ABZR87_RS20040 and ABZR87_RS20045 are separated by 30 nucleotides
ABZR87_RS20030: ABZR87_RS20030 - PAS domain-containing sensor histidine kinase, at 871,757 to 873,145
_RS20030
ABZR87_RS20035: ABZR87_RS20035 - helix-turn-helix domain-containing protein, at 873,399 to 874,199
_RS20035
ABZR87_RS20040: ABZR87_RS20040 - BON domain-containing protein, at 874,228 to 874,875
_RS20040
ABZR87_RS20045: ABZR87_RS20045 - TraR/DksA family transcriptional regulator, at 874,906 to 875,268
_RS20045
Position (kb) 873
874
875 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 872.569 kb on + strand, within ABZR87_RS20030 at 872.570 kb on - strand, within ABZR87_RS20030 at 872.570 kb on - strand, within ABZR87_RS20030 at 872.570 kb on - strand, within ABZR87_RS20030 at 872.570 kb on - strand, within ABZR87_RS20030 at 872.677 kb on + strand, within ABZR87_RS20030 at 872.677 kb on + strand, within ABZR87_RS20030 at 872.677 kb on + strand, within ABZR87_RS20030 at 872.678 kb on - strand, within ABZR87_RS20030 at 872.875 kb on + strand, within ABZR87_RS20030 at 872.875 kb on + strand, within ABZR87_RS20030 at 872.876 kb on - strand, within ABZR87_RS20030 at 872.876 kb on - strand, within ABZR87_RS20030 at 872.892 kb on + strand, within ABZR87_RS20030 at 872.892 kb on + strand, within ABZR87_RS20030 at 873.014 kb on + strand at 873.138 kb on + strand at 873.138 kb on + strand at 873.138 kb on + strand at 873.138 kb on + strand at 873.139 kb on - strand at 873.139 kb on - strand at 873.139 kb on - strand at 873.139 kb on - strand at 873.139 kb on - strand at 873.139 kb on - strand at 873.139 kb on - strand at 873.161 kb on + strand at 873.161 kb on + strand at 873.162 kb on - strand at 873.162 kb on - strand at 873.162 kb on - strand at 873.162 kb on - strand at 873.164 kb on + strand at 873.164 kb on + strand at 873.164 kb on + strand at 873.164 kb on + strand at 873.164 kb on + strand at 873.165 kb on - strand at 873.165 kb on - strand at 873.165 kb on - strand at 873.168 kb on + strand at 873.168 kb on + strand at 873.168 kb on + strand at 873.168 kb on + strand at 873.168 kb on + strand at 873.168 kb on + strand at 873.168 kb on + strand at 873.168 kb on + strand at 873.168 kb on + strand at 873.168 kb on + strand at 873.169 kb on - strand at 873.169 kb on - strand at 873.169 kb on - strand at 873.169 kb on - strand at 873.169 kb on - strand at 873.169 kb on - strand at 873.169 kb on - strand at 873.169 kb on - strand at 873.169 kb on - strand at 873.169 kb on - strand at 873.291 kb on + strand at 873.300 kb on + strand at 873.300 kb on + strand at 873.372 kb on - strand at 873.372 kb on - strand at 873.372 kb on - strand at 873.416 kb on - strand at 873.416 kb on - strand at 873.416 kb on - strand at 873.416 kb on - strand at 873.416 kb on - strand at 873.675 kb on + strand, within ABZR87_RS20035 at 873.675 kb on + strand, within ABZR87_RS20035 at 873.676 kb on - strand, within ABZR87_RS20035 at 873.676 kb on - strand, within ABZR87_RS20035 at 874.026 kb on + strand, within ABZR87_RS20035 at 874.026 kb on + strand, within ABZR87_RS20035 at 874.027 kb on - strand, within ABZR87_RS20035 at 874.077 kb on + strand, within ABZR87_RS20035 at 874.078 kb on - strand, within ABZR87_RS20035 at 874.078 kb on - strand, within ABZR87_RS20035 at 874.332 kb on + strand, within ABZR87_RS20040 at 874.333 kb on - strand, within ABZR87_RS20040 at 874.333 kb on - strand, within ABZR87_RS20040 at 874.745 kb on + strand, within ABZR87_RS20040 at 874.745 kb on + strand, within ABZR87_RS20040 at 874.745 kb on + strand, within ABZR87_RS20040 at 874.745 kb on + strand, within ABZR87_RS20040 at 874.745 kb on + strand, within ABZR87_RS20040 at 874.746 kb on - strand, within ABZR87_RS20040 at 874.746 kb on - strand, within ABZR87_RS20040 at 874.876 kb on - strand at 874.894 kb on - strand at 874.894 kb on - strand at 874.894 kb on - strand at 875.018 kb on + strand, within ABZR87_RS20045 at 875.018 kb on + strand, within ABZR87_RS20045 at 875.018 kb on + strand, within ABZR87_RS20045 at 875.018 kb on + strand, within ABZR87_RS20045 at 875.018 kb on + strand, within ABZR87_RS20045 at 875.019 kb on - strand, within ABZR87_RS20045 at 875.019 kb on - strand, within ABZR87_RS20045 at 875.019 kb on - strand, within ABZR87_RS20045 at 875.034 kb on + strand, within ABZR87_RS20045 at 875.034 kb on + strand, within ABZR87_RS20045 at 875.034 kb on + strand, within ABZR87_RS20045 at 875.035 kb on - strand, within ABZR87_RS20045 at 875.035 kb on - strand, within ABZR87_RS20045 at 875.035 kb on - strand, within ABZR87_RS20045 at 875.035 kb on - strand, within ABZR87_RS20045
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB remove 872,569 + ABZR87_RS20030 0.58 +0.9 872,570 - ABZR87_RS20030 0.59 -3.2 872,570 - ABZR87_RS20030 0.59 -0.0 872,570 - ABZR87_RS20030 0.59 +0.2 872,570 - ABZR87_RS20030 0.59 +0.3 872,677 + ABZR87_RS20030 0.66 -0.7 872,677 + ABZR87_RS20030 0.66 -0.4 872,677 + ABZR87_RS20030 0.66 -0.0 872,678 - ABZR87_RS20030 0.66 -2.0 872,875 + ABZR87_RS20030 0.80 +0.1 872,875 + ABZR87_RS20030 0.80 -1.5 872,876 - ABZR87_RS20030 0.81 -1.5 872,876 - ABZR87_RS20030 0.81 +0.3 872,892 + ABZR87_RS20030 0.82 -1.9 872,892 + ABZR87_RS20030 0.82 +0.6 873,014 + -0.2 873,138 + -1.6 873,138 + +0.6 873,138 + -3.5 873,138 + +0.7 873,139 - +0.3 873,139 - -1.4 873,139 - -0.3 873,139 - +1.1 873,139 - -1.0 873,139 - +1.5 873,139 - +1.7 873,161 + +0.6 873,161 + -0.1 873,162 - -2.3 873,162 - -0.3 873,162 - -0.8 873,162 - -0.6 873,164 + +1.2 873,164 + -1.0 873,164 + -0.5 873,164 + -2.4 873,164 + +1.4 873,165 - -0.8 873,165 - +0.3 873,165 - -0.9 873,168 + -0.2 873,168 + +1.1 873,168 + -1.6 873,168 + +0.6 873,168 + +0.7 873,168 + -0.2 873,168 + -0.3 873,168 + -0.6 873,168 + +1.5 873,168 + -1.4 873,169 - -0.5 873,169 - +0.9 873,169 - -0.8 873,169 - -1.1 873,169 - -0.0 873,169 - -0.3 873,169 - -0.3 873,169 - -1.6 873,169 - -0.1 873,169 - -2.1 873,291 + -2.2 873,300 + +0.4 873,300 + -0.2 873,372 - -0.5 873,372 - -0.3 873,372 - +1.6 873,416 - +1.1 873,416 - -2.1 873,416 - -1.6 873,416 - -0.9 873,416 - +0.1 873,675 + ABZR87_RS20035 0.34 -0.6 873,675 + ABZR87_RS20035 0.34 +0.6 873,676 - ABZR87_RS20035 0.35 +1.3 873,676 - ABZR87_RS20035 0.35 -0.2 874,026 + ABZR87_RS20035 0.78 +1.5 874,026 + ABZR87_RS20035 0.78 +0.6 874,027 - ABZR87_RS20035 0.78 -1.7 874,077 + ABZR87_RS20035 0.85 -1.9 874,078 - ABZR87_RS20035 0.85 +0.4 874,078 - ABZR87_RS20035 0.85 -0.3 874,332 + ABZR87_RS20040 0.16 +0.3 874,333 - ABZR87_RS20040 0.16 +0.8 874,333 - ABZR87_RS20040 0.16 +0.5 874,745 + ABZR87_RS20040 0.80 -2.5 874,745 + ABZR87_RS20040 0.80 +0.4 874,745 + ABZR87_RS20040 0.80 -0.3 874,745 + ABZR87_RS20040 0.80 -0.2 874,745 + ABZR87_RS20040 0.80 -1.1 874,746 - ABZR87_RS20040 0.80 -0.5 874,746 - ABZR87_RS20040 0.80 -0.9 874,876 - +0.3 874,894 - -2.5 874,894 - -1.5 874,894 - -1.7 875,018 + ABZR87_RS20045 0.31 -0.4 875,018 + ABZR87_RS20045 0.31 -0.5 875,018 + ABZR87_RS20045 0.31 +1.1 875,018 + ABZR87_RS20045 0.31 +0.1 875,018 + ABZR87_RS20045 0.31 -0.7 875,019 - ABZR87_RS20045 0.31 -2.9 875,019 - ABZR87_RS20045 0.31 +0.9 875,019 - ABZR87_RS20045 0.31 +0.6 875,034 + ABZR87_RS20045 0.35 -0.1 875,034 + ABZR87_RS20045 0.35 -0.3 875,034 + ABZR87_RS20045 0.35 +1.1 875,035 - ABZR87_RS20045 0.36 -0.5 875,035 - ABZR87_RS20045 0.36 +0.9 875,035 - ABZR87_RS20045 0.36 -1.2 875,035 - ABZR87_RS20045 0.36 -1.2
Or see this region's nucleotide sequence