Experiment: soil EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20000 and ABZR87_RS20005 are separated by 37 nucleotides ABZR87_RS20005 and ABZR87_RS20010 are separated by 25 nucleotides ABZR87_RS20010 and ABZR87_RS20015 are separated by 4 nucleotides ABZR87_RS20015 and ABZR87_RS20020 are separated by 42 nucleotides
ABZR87_RS20000: ABZR87_RS20000 - bifunctional aminoglycoside phosphotransferase/ATP-binding protein, at 864,700 to 866,247
_RS20000
ABZR87_RS20005: ABZR87_RS20005 - hypothetical protein, at 866,285 to 866,926
_RS20005
ABZR87_RS20010: ABZR87_RS20010 - DeoR family transcriptional regulator, at 866,952 to 867,635
_RS20010
ABZR87_RS20015: ABZR87_RS20015 - phosphoribosyltransferase family protein, at 867,640 to 868,290
_RS20015
ABZR87_RS20020: ABZR87_RS20020 - magnesium-translocating P-type ATPase, at 868,333 to 870,939
_RS20020
Position (kb) 866
867
868 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 866.040 kb on - strand, within ABZR87_RS20000 at 866.146 kb on - strand at 866.245 kb on + strand at 866.245 kb on + strand at 866.277 kb on + strand at 866.277 kb on + strand at 866.277 kb on + strand at 866.277 kb on + strand at 866.277 kb on + strand at 866.277 kb on + strand at 866.277 kb on + strand at 866.277 kb on + strand at 866.277 kb on + strand at 866.278 kb on - strand at 866.278 kb on - strand at 866.278 kb on - strand at 866.278 kb on - strand at 866.278 kb on - strand at 866.341 kb on + strand at 866.341 kb on + strand at 866.341 kb on + strand at 866.342 kb on - strand at 866.342 kb on - strand at 866.342 kb on - strand at 866.342 kb on - strand at 866.351 kb on + strand, within ABZR87_RS20005 at 866.351 kb on + strand, within ABZR87_RS20005 at 866.352 kb on - strand, within ABZR87_RS20005 at 866.352 kb on - strand, within ABZR87_RS20005 at 866.352 kb on - strand, within ABZR87_RS20005 at 866.368 kb on + strand, within ABZR87_RS20005 at 866.368 kb on + strand, within ABZR87_RS20005 at 866.368 kb on + strand, within ABZR87_RS20005 at 866.369 kb on - strand, within ABZR87_RS20005 at 866.455 kb on + strand, within ABZR87_RS20005 at 866.455 kb on + strand, within ABZR87_RS20005 at 866.456 kb on - strand, within ABZR87_RS20005 at 866.456 kb on - strand, within ABZR87_RS20005 at 866.456 kb on - strand, within ABZR87_RS20005 at 866.628 kb on + strand, within ABZR87_RS20005 at 866.629 kb on - strand, within ABZR87_RS20005 at 866.705 kb on - strand, within ABZR87_RS20005 at 866.726 kb on + strand, within ABZR87_RS20005 at 866.727 kb on - strand, within ABZR87_RS20005 at 866.727 kb on - strand, within ABZR87_RS20005 at 866.727 kb on - strand, within ABZR87_RS20005 at 866.727 kb on - strand, within ABZR87_RS20005 at 866.727 kb on - strand, within ABZR87_RS20005 at 866.938 kb on - strand at 866.938 kb on - strand at 867.099 kb on + strand, within ABZR87_RS20010 at 867.100 kb on - strand, within ABZR87_RS20010 at 867.100 kb on - strand, within ABZR87_RS20010 at 867.221 kb on + strand, within ABZR87_RS20010 at 867.222 kb on - strand, within ABZR87_RS20010 at 867.222 kb on - strand, within ABZR87_RS20010 at 867.222 kb on - strand, within ABZR87_RS20010 at 867.222 kb on - strand, within ABZR87_RS20010 at 867.276 kb on + strand, within ABZR87_RS20010 at 867.339 kb on + strand, within ABZR87_RS20010 at 867.339 kb on + strand, within ABZR87_RS20010 at 867.339 kb on + strand, within ABZR87_RS20010 at 867.339 kb on + strand, within ABZR87_RS20010 at 867.340 kb on - strand, within ABZR87_RS20010 at 867.633 kb on + strand at 867.633 kb on + strand at 867.698 kb on - strand at 867.698 kb on - strand at 867.868 kb on + strand, within ABZR87_RS20015 at 867.869 kb on - strand, within ABZR87_RS20015 at 867.869 kb on - strand, within ABZR87_RS20015 at 867.880 kb on + strand, within ABZR87_RS20015 at 867.903 kb on + strand, within ABZR87_RS20015 at 867.903 kb on + strand, within ABZR87_RS20015 at 867.903 kb on + strand, within ABZR87_RS20015 at 867.903 kb on + strand, within ABZR87_RS20015 at 867.904 kb on - strand, within ABZR87_RS20015 at 867.904 kb on - strand, within ABZR87_RS20015 at 867.904 kb on - strand, within ABZR87_RS20015 at 867.904 kb on - strand, within ABZR87_RS20015 at 867.910 kb on + strand, within ABZR87_RS20015 at 867.910 kb on + strand, within ABZR87_RS20015 at 867.910 kb on + strand, within ABZR87_RS20015 at 867.911 kb on - strand, within ABZR87_RS20015 at 867.941 kb on - strand, within ABZR87_RS20015 at 867.967 kb on + strand, within ABZR87_RS20015 at 867.967 kb on + strand, within ABZR87_RS20015 at 867.968 kb on - strand, within ABZR87_RS20015 at 867.968 kb on - strand, within ABZR87_RS20015 at 867.968 kb on - strand, within ABZR87_RS20015 at 867.968 kb on - strand, within ABZR87_RS20015 at 867.969 kb on + strand, within ABZR87_RS20015 at 867.969 kb on + strand, within ABZR87_RS20015 at 867.988 kb on + strand, within ABZR87_RS20015 at 867.988 kb on + strand, within ABZR87_RS20015 at 867.989 kb on - strand, within ABZR87_RS20015 at 868.172 kb on - strand, within ABZR87_RS20015 at 868.200 kb on + strand, within ABZR87_RS20015 at 868.200 kb on + strand, within ABZR87_RS20015 at 868.200 kb on + strand, within ABZR87_RS20015 at 868.200 kb on + strand, within ABZR87_RS20015 at 868.200 kb on + strand, within ABZR87_RS20015 at 868.200 kb on + strand, within ABZR87_RS20015 at 868.201 kb on - strand, within ABZR87_RS20015 at 868.201 kb on - strand, within ABZR87_RS20015 at 868.201 kb on - strand, within ABZR87_RS20015 at 868.204 kb on + strand, within ABZR87_RS20015 at 868.204 kb on + strand, within ABZR87_RS20015 at 868.204 kb on + strand, within ABZR87_RS20015 at 868.204 kb on + strand, within ABZR87_RS20015 at 868.204 kb on + strand, within ABZR87_RS20015 at 868.204 kb on + strand, within ABZR87_RS20015 at 868.204 kb on + strand, within ABZR87_RS20015 at 868.204 kb on + strand, within ABZR87_RS20015 at 868.204 kb on + strand, within ABZR87_RS20015 at 868.204 kb on + strand, within ABZR87_RS20015 at 868.205 kb on - strand, within ABZR87_RS20015 at 868.205 kb on - strand, within ABZR87_RS20015 at 868.205 kb on - strand, within ABZR87_RS20015 at 868.205 kb on - strand, within ABZR87_RS20015 at 868.205 kb on - strand, within ABZR87_RS20015 at 868.205 kb on - strand, within ABZR87_RS20015 at 868.205 kb on - strand, within ABZR87_RS20015 at 868.205 kb on - strand, within ABZR87_RS20015 at 868.205 kb on - strand, within ABZR87_RS20015 at 868.205 kb on - strand, within ABZR87_RS20015 at 868.207 kb on + strand, within ABZR87_RS20015 at 868.207 kb on + strand, within ABZR87_RS20015 at 868.208 kb on - strand, within ABZR87_RS20015 at 868.346 kb on + strand at 868.346 kb on + strand at 868.346 kb on + strand at 868.347 kb on - strand at 868.347 kb on - strand at 868.358 kb on + strand at 868.358 kb on + strand at 868.358 kb on + strand at 868.359 kb on - strand at 868.359 kb on - strand at 868.376 kb on + strand at 868.391 kb on + strand at 868.392 kb on - strand at 868.392 kb on - strand at 868.392 kb on - strand at 868.424 kb on + strand at 868.425 kb on - strand at 868.527 kb on + strand at 868.572 kb on + strand at 868.572 kb on + strand at 868.572 kb on + strand at 868.572 kb on + strand at 868.573 kb on - strand at 868.573 kb on - strand at 868.573 kb on - strand at 868.573 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB remove 866,040 - ABZR87_RS20000 0.87 -1.8 866,146 - +0.4 866,245 + +0.7 866,245 + -1.7 866,277 + +0.9 866,277 + -0.4 866,277 + -0.2 866,277 + +0.3 866,277 + -0.9 866,277 + -0.8 866,277 + +0.4 866,277 + -1.0 866,277 + -0.4 866,278 - -1.2 866,278 - -0.1 866,278 - -0.3 866,278 - -0.1 866,278 - -0.1 866,341 + +0.5 866,341 + +0.0 866,341 + -0.8 866,342 - -0.7 866,342 - +0.6 866,342 - -0.1 866,342 - +0.2 866,351 + ABZR87_RS20005 0.10 -1.1 866,351 + ABZR87_RS20005 0.10 +0.8 866,352 - ABZR87_RS20005 0.10 +1.0 866,352 - ABZR87_RS20005 0.10 -1.8 866,352 - ABZR87_RS20005 0.10 -0.0 866,368 + ABZR87_RS20005 0.13 -1.3 866,368 + ABZR87_RS20005 0.13 +0.1 866,368 + ABZR87_RS20005 0.13 +0.2 866,369 - ABZR87_RS20005 0.13 +1.6 866,455 + ABZR87_RS20005 0.26 +0.7 866,455 + ABZR87_RS20005 0.26 -1.1 866,456 - ABZR87_RS20005 0.27 +1.5 866,456 - ABZR87_RS20005 0.27 +1.0 866,456 - ABZR87_RS20005 0.27 -0.4 866,628 + ABZR87_RS20005 0.53 -3.2 866,629 - ABZR87_RS20005 0.54 -0.4 866,705 - ABZR87_RS20005 0.65 -2.6 866,726 + ABZR87_RS20005 0.69 -0.3 866,727 - ABZR87_RS20005 0.69 -1.2 866,727 - ABZR87_RS20005 0.69 -1.5 866,727 - ABZR87_RS20005 0.69 +0.6 866,727 - ABZR87_RS20005 0.69 -0.9 866,727 - ABZR87_RS20005 0.69 +0.7 866,938 - +0.1 866,938 - +1.0 867,099 + ABZR87_RS20010 0.21 +0.2 867,100 - ABZR87_RS20010 0.22 +1.7 867,100 - ABZR87_RS20010 0.22 -0.5 867,221 + ABZR87_RS20010 0.39 -0.3 867,222 - ABZR87_RS20010 0.39 +0.4 867,222 - ABZR87_RS20010 0.39 +0.8 867,222 - ABZR87_RS20010 0.39 -0.6 867,222 - ABZR87_RS20010 0.39 +1.0 867,276 + ABZR87_RS20010 0.47 -0.5 867,339 + ABZR87_RS20010 0.57 -1.0 867,339 + ABZR87_RS20010 0.57 +0.1 867,339 + ABZR87_RS20010 0.57 -0.2 867,339 + ABZR87_RS20010 0.57 -1.8 867,340 - ABZR87_RS20010 0.57 -0.3 867,633 + +0.0 867,633 + +0.3 867,698 - +0.5 867,698 - -0.2 867,868 + ABZR87_RS20015 0.35 -1.2 867,869 - ABZR87_RS20015 0.35 +0.3 867,869 - ABZR87_RS20015 0.35 +0.0 867,880 + ABZR87_RS20015 0.37 -2.6 867,903 + ABZR87_RS20015 0.40 -1.0 867,903 + ABZR87_RS20015 0.40 +1.7 867,903 + ABZR87_RS20015 0.40 -2.9 867,903 + ABZR87_RS20015 0.40 -3.0 867,904 - ABZR87_RS20015 0.41 -0.4 867,904 - ABZR87_RS20015 0.41 -0.4 867,904 - ABZR87_RS20015 0.41 -1.0 867,904 - ABZR87_RS20015 0.41 +0.5 867,910 + ABZR87_RS20015 0.41 +0.5 867,910 + ABZR87_RS20015 0.41 -0.9 867,910 + ABZR87_RS20015 0.41 +0.3 867,911 - ABZR87_RS20015 0.42 -0.1 867,941 - ABZR87_RS20015 0.46 -1.0 867,967 + ABZR87_RS20015 0.50 +0.2 867,967 + ABZR87_RS20015 0.50 +0.0 867,968 - ABZR87_RS20015 0.50 -0.7 867,968 - ABZR87_RS20015 0.50 -3.2 867,968 - ABZR87_RS20015 0.50 -0.1 867,968 - ABZR87_RS20015 0.50 -0.6 867,969 + ABZR87_RS20015 0.51 +0.5 867,969 + ABZR87_RS20015 0.51 -0.3 867,988 + ABZR87_RS20015 0.53 +0.4 867,988 + ABZR87_RS20015 0.53 +1.9 867,989 - ABZR87_RS20015 0.54 +0.3 868,172 - ABZR87_RS20015 0.82 -2.6 868,200 + ABZR87_RS20015 0.86 -1.1 868,200 + ABZR87_RS20015 0.86 +1.9 868,200 + ABZR87_RS20015 0.86 +1.0 868,200 + ABZR87_RS20015 0.86 -0.5 868,200 + ABZR87_RS20015 0.86 +0.7 868,200 + ABZR87_RS20015 0.86 -0.7 868,201 - ABZR87_RS20015 0.86 -1.1 868,201 - ABZR87_RS20015 0.86 -0.0 868,201 - ABZR87_RS20015 0.86 -3.3 868,204 + ABZR87_RS20015 0.87 +0.6 868,204 + ABZR87_RS20015 0.87 -0.1 868,204 + ABZR87_RS20015 0.87 -0.1 868,204 + ABZR87_RS20015 0.87 +0.7 868,204 + ABZR87_RS20015 0.87 +0.2 868,204 + ABZR87_RS20015 0.87 -0.6 868,204 + ABZR87_RS20015 0.87 -1.2 868,204 + ABZR87_RS20015 0.87 +0.5 868,204 + ABZR87_RS20015 0.87 -1.4 868,204 + ABZR87_RS20015 0.87 +1.0 868,205 - ABZR87_RS20015 0.87 +0.5 868,205 - ABZR87_RS20015 0.87 -0.4 868,205 - ABZR87_RS20015 0.87 +0.2 868,205 - ABZR87_RS20015 0.87 +0.1 868,205 - ABZR87_RS20015 0.87 -0.8 868,205 - ABZR87_RS20015 0.87 -1.1 868,205 - ABZR87_RS20015 0.87 +1.1 868,205 - ABZR87_RS20015 0.87 +1.3 868,205 - ABZR87_RS20015 0.87 +0.6 868,205 - ABZR87_RS20015 0.87 -1.4 868,207 + ABZR87_RS20015 0.87 -0.2 868,207 + ABZR87_RS20015 0.87 +0.5 868,208 - ABZR87_RS20015 0.87 -0.8 868,346 + -1.3 868,346 + +1.3 868,346 + +1.1 868,347 - -0.2 868,347 - -1.3 868,358 + +0.7 868,358 + -2.3 868,358 + -0.9 868,359 - -0.1 868,359 - -3.0 868,376 + -0.1 868,391 + +0.7 868,392 - -0.1 868,392 - -0.0 868,392 - -1.2 868,424 + +1.3 868,425 - +0.3 868,527 + -1.4 868,572 + -0.2 868,572 + +1.0 868,572 + -0.2 868,572 + -1.0 868,573 - -0.4 868,573 - +0.1 868,573 - -0.6 868,573 - +0.8
Or see this region's nucleotide sequence