Experiment: soil EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19055 and ABZR87_RS19060 overlap by 7 nucleotides ABZR87_RS19060 and ABZR87_RS19065 are separated by 5 nucleotides ABZR87_RS19065 and ABZR87_RS19070 are separated by 23 nucleotides
ABZR87_RS19055: ABZR87_RS19055 - LysR family transcriptional regulator, at 637,440 to 638,411
_RS19055
ABZR87_RS19060: ABZR87_RS19060 - glyoxylate/hydroxypyruvate reductase A, at 638,405 to 639,331
_RS19060
ABZR87_RS19065: ABZR87_RS19065 - class II aldolase/adducin family protein, at 639,337 to 640,137
_RS19065
ABZR87_RS19070: ABZR87_RS19070 - MFS transporter, at 640,161 to 641,480
_RS19070
Position (kb) 639
640
641 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 638.374 kb on - strand at 638.409 kb on + strand at 638.409 kb on + strand at 638.483 kb on + strand at 638.483 kb on + strand at 638.484 kb on - strand at 638.484 kb on - strand at 638.484 kb on - strand at 638.767 kb on + strand, within ABZR87_RS19060 at 638.767 kb on + strand, within ABZR87_RS19060 at 638.768 kb on - strand, within ABZR87_RS19060 at 638.768 kb on - strand, within ABZR87_RS19060 at 638.811 kb on + strand, within ABZR87_RS19060 at 638.811 kb on + strand, within ABZR87_RS19060 at 639.237 kb on + strand, within ABZR87_RS19060 at 639.238 kb on - strand, within ABZR87_RS19060 at 639.530 kb on + strand, within ABZR87_RS19065 at 639.530 kb on + strand, within ABZR87_RS19065 at 639.530 kb on + strand, within ABZR87_RS19065 at 639.665 kb on + strand, within ABZR87_RS19065 at 639.665 kb on + strand, within ABZR87_RS19065 at 639.665 kb on + strand, within ABZR87_RS19065 at 639.666 kb on - strand, within ABZR87_RS19065 at 639.666 kb on - strand, within ABZR87_RS19065 at 639.674 kb on + strand, within ABZR87_RS19065 at 639.675 kb on - strand, within ABZR87_RS19065 at 639.690 kb on - strand, within ABZR87_RS19065 at 639.690 kb on - strand, within ABZR87_RS19065 at 639.762 kb on + strand, within ABZR87_RS19065 at 639.762 kb on + strand, within ABZR87_RS19065 at 639.763 kb on - strand, within ABZR87_RS19065 at 639.768 kb on + strand, within ABZR87_RS19065 at 639.768 kb on + strand, within ABZR87_RS19065 at 639.768 kb on + strand, within ABZR87_RS19065 at 639.945 kb on - strand, within ABZR87_RS19065 at 640.047 kb on - strand, within ABZR87_RS19065 at 640.047 kb on - strand, within ABZR87_RS19065 at 640.156 kb on - strand at 640.156 kb on - strand at 640.156 kb on - strand at 640.156 kb on - strand at 640.294 kb on + strand, within ABZR87_RS19070 at 640.361 kb on - strand, within ABZR87_RS19070 at 640.432 kb on + strand, within ABZR87_RS19070 at 640.432 kb on + strand, within ABZR87_RS19070 at 640.432 kb on + strand, within ABZR87_RS19070 at 640.673 kb on - strand, within ABZR87_RS19070
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB remove 638,374 - +1.0 638,409 + +0.0 638,409 + -1.2 638,483 + -0.2 638,483 + +1.7 638,484 - -0.4 638,484 - -1.5 638,484 - -2.5 638,767 + ABZR87_RS19060 0.39 +0.7 638,767 + ABZR87_RS19060 0.39 +0.2 638,768 - ABZR87_RS19060 0.39 -0.4 638,768 - ABZR87_RS19060 0.39 +0.1 638,811 + ABZR87_RS19060 0.44 -1.5 638,811 + ABZR87_RS19060 0.44 +0.2 639,237 + ABZR87_RS19060 0.90 -0.3 639,238 - ABZR87_RS19060 0.90 +0.2 639,530 + ABZR87_RS19065 0.24 +0.3 639,530 + ABZR87_RS19065 0.24 +0.3 639,530 + ABZR87_RS19065 0.24 -1.3 639,665 + ABZR87_RS19065 0.41 +0.3 639,665 + ABZR87_RS19065 0.41 +0.6 639,665 + ABZR87_RS19065 0.41 -0.3 639,666 - ABZR87_RS19065 0.41 -0.1 639,666 - ABZR87_RS19065 0.41 -0.8 639,674 + ABZR87_RS19065 0.42 -0.9 639,675 - ABZR87_RS19065 0.42 -0.1 639,690 - ABZR87_RS19065 0.44 -2.9 639,690 - ABZR87_RS19065 0.44 -0.2 639,762 + ABZR87_RS19065 0.53 -0.5 639,762 + ABZR87_RS19065 0.53 -0.2 639,763 - ABZR87_RS19065 0.53 -1.0 639,768 + ABZR87_RS19065 0.54 -0.4 639,768 + ABZR87_RS19065 0.54 -0.9 639,768 + ABZR87_RS19065 0.54 -2.3 639,945 - ABZR87_RS19065 0.76 +0.3 640,047 - ABZR87_RS19065 0.89 +0.4 640,047 - ABZR87_RS19065 0.89 -1.1 640,156 - +1.0 640,156 - -0.0 640,156 - -0.8 640,156 - +1.5 640,294 + ABZR87_RS19070 0.10 -0.8 640,361 - ABZR87_RS19070 0.15 +0.1 640,432 + ABZR87_RS19070 0.21 +0.9 640,432 + ABZR87_RS19070 0.21 -1.1 640,432 + ABZR87_RS19070 0.21 +0.1 640,673 - ABZR87_RS19070 0.39 +0.5
Or see this region's nucleotide sequence