Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18500

Experiment: soil EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18495 and ABZR87_RS18500 are separated by 27 nucleotidesABZR87_RS18500 and ABZR87_RS18505 are separated by 68 nucleotidesABZR87_RS18505 and ABZR87_RS18510 are separated by 15 nucleotidesABZR87_RS18510 and ABZR87_RS18515 are separated by 177 nucleotides ABZR87_RS18495: ABZR87_RS18495 - multidrug transporter subunit MdtD, at 507,212 to 508,630 _RS18495 ABZR87_RS18500: ABZR87_RS18500 - AraC family transcriptional regulator, at 508,658 to 509,713 _RS18500 ABZR87_RS18505: ABZR87_RS18505 - TetR/AcrR family transcriptional regulator, at 509,782 to 510,228 _RS18505 ABZR87_RS18510: ABZR87_RS18510 - hypothetical protein, at 510,244 to 510,363 _RS18510 ABZR87_RS18515: ABZR87_RS18515 - hypothetical protein, at 510,541 to 510,972 _RS18515 Position (kb) 508 509 510Strain fitness (log2 ratio) -2 -1 0 1 2at 507.705 kb on + strand, within ABZR87_RS18495at 507.705 kb on + strand, within ABZR87_RS18495at 507.705 kb on + strand, within ABZR87_RS18495at 507.706 kb on - strand, within ABZR87_RS18495at 507.706 kb on - strand, within ABZR87_RS18495at 507.706 kb on - strand, within ABZR87_RS18495at 507.945 kb on - strand, within ABZR87_RS18495at 507.945 kb on - strand, within ABZR87_RS18495at 507.945 kb on - strand, within ABZR87_RS18495at 507.945 kb on - strand, within ABZR87_RS18495at 507.945 kb on - strand, within ABZR87_RS18495at 507.945 kb on - strand, within ABZR87_RS18495at 507.946 kb on + strand, within ABZR87_RS18495at 507.946 kb on + strand, within ABZR87_RS18495at 507.947 kb on - strand, within ABZR87_RS18495at 508.131 kb on + strand, within ABZR87_RS18495at 508.132 kb on - strand, within ABZR87_RS18495at 508.132 kb on - strand, within ABZR87_RS18495at 508.132 kb on - strand, within ABZR87_RS18495at 508.200 kb on - strand, within ABZR87_RS18495at 508.502 kb on + strandat 508.602 kb on + strandat 508.603 kb on - strandat 508.816 kb on - strand, within ABZR87_RS18500at 508.821 kb on + strand, within ABZR87_RS18500at 508.902 kb on + strand, within ABZR87_RS18500at 508.902 kb on + strand, within ABZR87_RS18500at 508.903 kb on - strand, within ABZR87_RS18500at 508.903 kb on - strand, within ABZR87_RS18500at 508.903 kb on - strand, within ABZR87_RS18500at 508.903 kb on - strand, within ABZR87_RS18500at 508.968 kb on + strand, within ABZR87_RS18500at 508.968 kb on + strand, within ABZR87_RS18500at 508.968 kb on + strand, within ABZR87_RS18500at 508.969 kb on - strand, within ABZR87_RS18500at 509.049 kb on + strand, within ABZR87_RS18500at 509.049 kb on + strand, within ABZR87_RS18500at 509.049 kb on + strand, within ABZR87_RS18500at 509.050 kb on - strand, within ABZR87_RS18500at 509.301 kb on - strand, within ABZR87_RS18500at 509.361 kb on + strand, within ABZR87_RS18500at 509.362 kb on - strand, within ABZR87_RS18500at 509.362 kb on - strand, within ABZR87_RS18500at 509.417 kb on - strand, within ABZR87_RS18500at 509.417 kb on - strand, within ABZR87_RS18500at 509.486 kb on - strand, within ABZR87_RS18500at 509.499 kb on + strand, within ABZR87_RS18500at 509.499 kb on + strand, within ABZR87_RS18500at 509.499 kb on + strand, within ABZR87_RS18500at 509.500 kb on - strand, within ABZR87_RS18500at 509.500 kb on - strand, within ABZR87_RS18500at 509.675 kb on - strandat 509.760 kb on - strandat 509.897 kb on + strand, within ABZR87_RS18505at 509.897 kb on + strand, within ABZR87_RS18505at 509.897 kb on + strand, within ABZR87_RS18505at 509.897 kb on + strand, within ABZR87_RS18505at 509.897 kb on + strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 510.069 kb on + strand, within ABZR87_RS18505at 510.086 kb on + strand, within ABZR87_RS18505at 510.124 kb on - strand, within ABZR87_RS18505at 510.170 kb on + strand, within ABZR87_RS18505at 510.348 kb on + strand, within ABZR87_RS18510at 510.348 kb on + strand, within ABZR87_RS18510at 510.348 kb on + strand, within ABZR87_RS18510at 510.348 kb on + strand, within ABZR87_RS18510at 510.349 kb on - strand, within ABZR87_RS18510at 510.349 kb on - strand, within ABZR87_RS18510at 510.349 kb on - strand, within ABZR87_RS18510at 510.349 kb on - strand, within ABZR87_RS18510at 510.414 kb on + strandat 510.415 kb on - strandat 510.468 kb on + strandat 510.468 kb on + strandat 510.469 kb on - strandat 510.469 kb on - strandat 510.471 kb on - strandat 510.512 kb on + strandat 510.512 kb on + strandat 510.513 kb on - strandat 510.513 kb on - strandat 510.513 kb on - strandat 510.513 kb on - strandat 510.542 kb on + strandat 510.542 kb on + strandat 510.542 kb on + strandat 510.543 kb on - strandat 510.569 kb on + strandat 510.569 kb on + strandat 510.570 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB
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507,705 + ABZR87_RS18495 0.35 +2.1
507,705 + ABZR87_RS18495 0.35 +0.5
507,705 + ABZR87_RS18495 0.35 -0.8
507,706 - ABZR87_RS18495 0.35 -0.5
507,706 - ABZR87_RS18495 0.35 -1.3
507,706 - ABZR87_RS18495 0.35 -0.7
507,945 - ABZR87_RS18495 0.52 -0.9
507,945 - ABZR87_RS18495 0.52 -0.6
507,945 - ABZR87_RS18495 0.52 +1.0
507,945 - ABZR87_RS18495 0.52 -1.5
507,945 - ABZR87_RS18495 0.52 +0.0
507,945 - ABZR87_RS18495 0.52 -0.3
507,946 + ABZR87_RS18495 0.52 -0.6
507,946 + ABZR87_RS18495 0.52 +0.7
507,947 - ABZR87_RS18495 0.52 -0.3
508,131 + ABZR87_RS18495 0.65 -0.7
508,132 - ABZR87_RS18495 0.65 -0.7
508,132 - ABZR87_RS18495 0.65 +0.4
508,132 - ABZR87_RS18495 0.65 -0.5
508,200 - ABZR87_RS18495 0.70 -1.3
508,502 + +1.1
508,602 + +0.4
508,603 - +1.1
508,816 - ABZR87_RS18500 0.15 +0.4
508,821 + ABZR87_RS18500 0.15 -0.1
508,902 + ABZR87_RS18500 0.23 +0.0
508,902 + ABZR87_RS18500 0.23 +0.9
508,903 - ABZR87_RS18500 0.23 +0.6
508,903 - ABZR87_RS18500 0.23 +0.2
508,903 - ABZR87_RS18500 0.23 +0.4
508,903 - ABZR87_RS18500 0.23 -0.0
508,968 + ABZR87_RS18500 0.29 +0.3
508,968 + ABZR87_RS18500 0.29 -1.3
508,968 + ABZR87_RS18500 0.29 +0.5
508,969 - ABZR87_RS18500 0.29 -2.2
509,049 + ABZR87_RS18500 0.37 +1.5
509,049 + ABZR87_RS18500 0.37 +1.4
509,049 + ABZR87_RS18500 0.37 +0.9
509,050 - ABZR87_RS18500 0.37 -0.3
509,301 - ABZR87_RS18500 0.61 +1.7
509,361 + ABZR87_RS18500 0.67 +0.2
509,362 - ABZR87_RS18500 0.67 -0.3
509,362 - ABZR87_RS18500 0.67 +1.6
509,417 - ABZR87_RS18500 0.72 -0.6
509,417 - ABZR87_RS18500 0.72 -2.3
509,486 - ABZR87_RS18500 0.78 +0.8
509,499 + ABZR87_RS18500 0.80 -1.1
509,499 + ABZR87_RS18500 0.80 -0.6
509,499 + ABZR87_RS18500 0.80 -1.5
509,500 - ABZR87_RS18500 0.80 -1.1
509,500 - ABZR87_RS18500 0.80 +0.4
509,675 - -0.2
509,760 - -0.2
509,897 + ABZR87_RS18505 0.26 -0.3
509,897 + ABZR87_RS18505 0.26 +0.4
509,897 + ABZR87_RS18505 0.26 +0.1
509,897 + ABZR87_RS18505 0.26 +0.8
509,897 + ABZR87_RS18505 0.26 -2.3
509,898 - ABZR87_RS18505 0.26 +0.3
509,898 - ABZR87_RS18505 0.26 -1.3
509,898 - ABZR87_RS18505 0.26 -0.2
509,898 - ABZR87_RS18505 0.26 -0.2
509,898 - ABZR87_RS18505 0.26 -0.4
509,898 - ABZR87_RS18505 0.26 +0.2
509,898 - ABZR87_RS18505 0.26 -0.5
509,898 - ABZR87_RS18505 0.26 -2.6
509,898 - ABZR87_RS18505 0.26 -0.3
509,898 - ABZR87_RS18505 0.26 -0.7
509,898 - ABZR87_RS18505 0.26 +2.4
509,898 - ABZR87_RS18505 0.26 -0.7
509,898 - ABZR87_RS18505 0.26 -0.2
509,898 - ABZR87_RS18505 0.26 +1.0
510,069 + ABZR87_RS18505 0.64 +0.4
510,086 + ABZR87_RS18505 0.68 -0.3
510,124 - ABZR87_RS18505 0.77 -0.3
510,170 + ABZR87_RS18505 0.87 +1.7
510,348 + ABZR87_RS18510 0.87 +0.1
510,348 + ABZR87_RS18510 0.87 -2.4
510,348 + ABZR87_RS18510 0.87 -1.0
510,348 + ABZR87_RS18510 0.87 +1.2
510,349 - ABZR87_RS18510 0.88 -1.1
510,349 - ABZR87_RS18510 0.88 +0.8
510,349 - ABZR87_RS18510 0.88 -0.1
510,349 - ABZR87_RS18510 0.88 -2.3
510,414 + +0.6
510,415 - -0.7
510,468 + -0.3
510,468 + +1.3
510,469 - -1.0
510,469 - -0.0
510,471 - +0.0
510,512 + -0.7
510,512 + +0.5
510,513 - +1.0
510,513 - -0.3
510,513 - -1.2
510,513 - +0.8
510,542 + +0.2
510,542 + -1.0
510,542 + -0.5
510,543 - +0.7
510,569 + -0.6
510,569 + +1.2
510,570 - -2.6

Or see this region's nucleotide sequence