Experiment: soil EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18485 and ABZR87_RS18490 are separated by 13 nucleotides ABZR87_RS18490 and ABZR87_RS18495 are separated by 125 nucleotides ABZR87_RS18495 and ABZR87_RS18500 are separated by 27 nucleotides
ABZR87_RS18485: ABZR87_RS18485 - GGDEF domain-containing protein, at 505,034 to 506,215
_RS18485
ABZR87_RS18490: ABZR87_RS18490 - LysR family transcriptional regulator, at 506,229 to 507,086
_RS18490
ABZR87_RS18495: ABZR87_RS18495 - multidrug transporter subunit MdtD, at 507,212 to 508,630
_RS18495
ABZR87_RS18500: ABZR87_RS18500 - AraC family transcriptional regulator, at 508,658 to 509,713
_RS18500
Position (kb) 507
508
509 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 506.213 kb on + strand at 506.409 kb on - strand, within ABZR87_RS18490 at 506.438 kb on + strand, within ABZR87_RS18490 at 506.438 kb on + strand, within ABZR87_RS18490 at 506.438 kb on + strand, within ABZR87_RS18490 at 506.438 kb on + strand, within ABZR87_RS18490 at 506.439 kb on - strand, within ABZR87_RS18490 at 506.692 kb on + strand, within ABZR87_RS18490 at 506.692 kb on + strand, within ABZR87_RS18490 at 506.693 kb on - strand, within ABZR87_RS18490 at 506.693 kb on - strand, within ABZR87_RS18490 at 507.029 kb on + strand at 507.029 kb on + strand at 507.029 kb on + strand at 507.035 kb on + strand at 507.036 kb on - strand at 507.036 kb on - strand at 507.130 kb on - strand at 507.159 kb on + strand at 507.393 kb on - strand, within ABZR87_RS18495 at 507.393 kb on - strand, within ABZR87_RS18495 at 507.464 kb on + strand, within ABZR87_RS18495 at 507.465 kb on - strand, within ABZR87_RS18495 at 507.465 kb on - strand, within ABZR87_RS18495 at 507.520 kb on + strand, within ABZR87_RS18495 at 507.520 kb on + strand, within ABZR87_RS18495 at 507.521 kb on - strand, within ABZR87_RS18495 at 507.521 kb on - strand, within ABZR87_RS18495 at 507.611 kb on - strand, within ABZR87_RS18495 at 507.626 kb on + strand, within ABZR87_RS18495 at 507.627 kb on - strand, within ABZR87_RS18495 at 507.627 kb on - strand, within ABZR87_RS18495 at 507.627 kb on - strand, within ABZR87_RS18495 at 507.705 kb on + strand, within ABZR87_RS18495 at 507.705 kb on + strand, within ABZR87_RS18495 at 507.705 kb on + strand, within ABZR87_RS18495 at 507.706 kb on - strand, within ABZR87_RS18495 at 507.706 kb on - strand, within ABZR87_RS18495 at 507.706 kb on - strand, within ABZR87_RS18495 at 507.945 kb on - strand, within ABZR87_RS18495 at 507.945 kb on - strand, within ABZR87_RS18495 at 507.945 kb on - strand, within ABZR87_RS18495 at 507.945 kb on - strand, within ABZR87_RS18495 at 507.945 kb on - strand, within ABZR87_RS18495 at 507.945 kb on - strand, within ABZR87_RS18495 at 507.946 kb on + strand, within ABZR87_RS18495 at 507.946 kb on + strand, within ABZR87_RS18495 at 507.947 kb on - strand, within ABZR87_RS18495 at 508.131 kb on + strand, within ABZR87_RS18495 at 508.132 kb on - strand, within ABZR87_RS18495 at 508.132 kb on - strand, within ABZR87_RS18495 at 508.132 kb on - strand, within ABZR87_RS18495 at 508.200 kb on - strand, within ABZR87_RS18495 at 508.502 kb on + strand at 508.602 kb on + strand at 508.603 kb on - strand at 508.816 kb on - strand, within ABZR87_RS18500 at 508.821 kb on + strand, within ABZR87_RS18500 at 508.902 kb on + strand, within ABZR87_RS18500 at 508.902 kb on + strand, within ABZR87_RS18500 at 508.903 kb on - strand, within ABZR87_RS18500 at 508.903 kb on - strand, within ABZR87_RS18500 at 508.903 kb on - strand, within ABZR87_RS18500 at 508.903 kb on - strand, within ABZR87_RS18500 at 508.968 kb on + strand, within ABZR87_RS18500 at 508.968 kb on + strand, within ABZR87_RS18500 at 508.968 kb on + strand, within ABZR87_RS18500 at 508.969 kb on - strand, within ABZR87_RS18500 at 509.049 kb on + strand, within ABZR87_RS18500 at 509.049 kb on + strand, within ABZR87_RS18500 at 509.049 kb on + strand, within ABZR87_RS18500 at 509.050 kb on - strand, within ABZR87_RS18500 at 509.301 kb on - strand, within ABZR87_RS18500 at 509.361 kb on + strand, within ABZR87_RS18500 at 509.362 kb on - strand, within ABZR87_RS18500 at 509.362 kb on - strand, within ABZR87_RS18500 at 509.417 kb on - strand, within ABZR87_RS18500 at 509.417 kb on - strand, within ABZR87_RS18500 at 509.486 kb on - strand, within ABZR87_RS18500 at 509.499 kb on + strand, within ABZR87_RS18500 at 509.499 kb on + strand, within ABZR87_RS18500 at 509.499 kb on + strand, within ABZR87_RS18500 at 509.500 kb on - strand, within ABZR87_RS18500 at 509.500 kb on - strand, within ABZR87_RS18500
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB remove 506,213 + -0.0 506,409 - ABZR87_RS18490 0.21 -0.1 506,438 + ABZR87_RS18490 0.24 +0.6 506,438 + ABZR87_RS18490 0.24 -0.5 506,438 + ABZR87_RS18490 0.24 -1.7 506,438 + ABZR87_RS18490 0.24 +0.4 506,439 - ABZR87_RS18490 0.24 -1.2 506,692 + ABZR87_RS18490 0.54 -1.2 506,692 + ABZR87_RS18490 0.54 -2.8 506,693 - ABZR87_RS18490 0.54 -0.0 506,693 - ABZR87_RS18490 0.54 -1.4 507,029 + -1.5 507,029 + +1.5 507,029 + -1.6 507,035 + +0.2 507,036 - -0.8 507,036 - -0.2 507,130 - -0.0 507,159 + -0.0 507,393 - ABZR87_RS18495 0.13 -0.1 507,393 - ABZR87_RS18495 0.13 +0.5 507,464 + ABZR87_RS18495 0.18 +1.3 507,465 - ABZR87_RS18495 0.18 -0.1 507,465 - ABZR87_RS18495 0.18 -0.2 507,520 + ABZR87_RS18495 0.22 -1.4 507,520 + ABZR87_RS18495 0.22 -1.1 507,521 - ABZR87_RS18495 0.22 -0.1 507,521 - ABZR87_RS18495 0.22 -0.3 507,611 - ABZR87_RS18495 0.28 -0.9 507,626 + ABZR87_RS18495 0.29 +0.2 507,627 - ABZR87_RS18495 0.29 -0.3 507,627 - ABZR87_RS18495 0.29 -1.4 507,627 - ABZR87_RS18495 0.29 +0.2 507,705 + ABZR87_RS18495 0.35 +2.1 507,705 + ABZR87_RS18495 0.35 +0.5 507,705 + ABZR87_RS18495 0.35 -0.8 507,706 - ABZR87_RS18495 0.35 -0.5 507,706 - ABZR87_RS18495 0.35 -1.3 507,706 - ABZR87_RS18495 0.35 -0.7 507,945 - ABZR87_RS18495 0.52 -0.9 507,945 - ABZR87_RS18495 0.52 -0.6 507,945 - ABZR87_RS18495 0.52 +1.0 507,945 - ABZR87_RS18495 0.52 -1.5 507,945 - ABZR87_RS18495 0.52 +0.0 507,945 - ABZR87_RS18495 0.52 -0.3 507,946 + ABZR87_RS18495 0.52 -0.6 507,946 + ABZR87_RS18495 0.52 +0.7 507,947 - ABZR87_RS18495 0.52 -0.3 508,131 + ABZR87_RS18495 0.65 -0.7 508,132 - ABZR87_RS18495 0.65 -0.7 508,132 - ABZR87_RS18495 0.65 +0.4 508,132 - ABZR87_RS18495 0.65 -0.5 508,200 - ABZR87_RS18495 0.70 -1.3 508,502 + +1.1 508,602 + +0.4 508,603 - +1.1 508,816 - ABZR87_RS18500 0.15 +0.4 508,821 + ABZR87_RS18500 0.15 -0.1 508,902 + ABZR87_RS18500 0.23 +0.0 508,902 + ABZR87_RS18500 0.23 +0.9 508,903 - ABZR87_RS18500 0.23 +0.6 508,903 - ABZR87_RS18500 0.23 +0.2 508,903 - ABZR87_RS18500 0.23 +0.4 508,903 - ABZR87_RS18500 0.23 -0.0 508,968 + ABZR87_RS18500 0.29 +0.3 508,968 + ABZR87_RS18500 0.29 -1.3 508,968 + ABZR87_RS18500 0.29 +0.5 508,969 - ABZR87_RS18500 0.29 -2.2 509,049 + ABZR87_RS18500 0.37 +1.5 509,049 + ABZR87_RS18500 0.37 +1.4 509,049 + ABZR87_RS18500 0.37 +0.9 509,050 - ABZR87_RS18500 0.37 -0.3 509,301 - ABZR87_RS18500 0.61 +1.7 509,361 + ABZR87_RS18500 0.67 +0.2 509,362 - ABZR87_RS18500 0.67 -0.3 509,362 - ABZR87_RS18500 0.67 +1.6 509,417 - ABZR87_RS18500 0.72 -0.6 509,417 - ABZR87_RS18500 0.72 -2.3 509,486 - ABZR87_RS18500 0.78 +0.8 509,499 + ABZR87_RS18500 0.80 -1.1 509,499 + ABZR87_RS18500 0.80 -0.6 509,499 + ABZR87_RS18500 0.80 -1.5 509,500 - ABZR87_RS18500 0.80 -1.1 509,500 - ABZR87_RS18500 0.80 +0.4
Or see this region's nucleotide sequence