Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18360

Experiment: soil EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18355 and ABZR87_RS18360 overlap by 4 nucleotidesABZR87_RS18360 and ABZR87_RS18365 are separated by 97 nucleotides ABZR87_RS18355: ABZR87_RS18355 - ABC transporter permease, at 484,669 to 485,718 _RS18355 ABZR87_RS18360: ABZR87_RS18360 - galactofuranose ABC transporter, permease protein YjfF, at 485,715 to 486,788 _RS18360 ABZR87_RS18365: ABZR87_RS18365 - helix-turn-helix domain-containing GNAT family N-acetyltransferase, at 486,886 to 487,860 _RS18365 Position (kb) 485 486 487Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 484.724 kb on + strandat 484.791 kb on + strand, within ABZR87_RS18355at 484.791 kb on + strand, within ABZR87_RS18355at 484.805 kb on - strand, within ABZR87_RS18355at 484.896 kb on + strand, within ABZR87_RS18355at 484.897 kb on - strand, within ABZR87_RS18355at 484.987 kb on + strand, within ABZR87_RS18355at 484.987 kb on + strand, within ABZR87_RS18355at 484.987 kb on + strand, within ABZR87_RS18355at 484.988 kb on - strand, within ABZR87_RS18355at 485.174 kb on - strand, within ABZR87_RS18355at 485.174 kb on - strand, within ABZR87_RS18355at 485.176 kb on + strand, within ABZR87_RS18355at 485.176 kb on + strand, within ABZR87_RS18355at 485.177 kb on - strand, within ABZR87_RS18355at 485.207 kb on - strand, within ABZR87_RS18355at 485.207 kb on - strand, within ABZR87_RS18355at 485.233 kb on + strand, within ABZR87_RS18355at 485.233 kb on + strand, within ABZR87_RS18355at 485.374 kb on + strand, within ABZR87_RS18355at 485.374 kb on + strand, within ABZR87_RS18355at 485.375 kb on - strand, within ABZR87_RS18355at 485.375 kb on - strand, within ABZR87_RS18355at 485.375 kb on - strand, within ABZR87_RS18355at 485.375 kb on - strand, within ABZR87_RS18355at 485.576 kb on - strand, within ABZR87_RS18355at 485.584 kb on + strand, within ABZR87_RS18355at 485.585 kb on - strand, within ABZR87_RS18355at 485.745 kb on + strandat 485.796 kb on + strandat 485.796 kb on + strandat 485.909 kb on - strand, within ABZR87_RS18360at 485.909 kb on - strand, within ABZR87_RS18360at 486.005 kb on - strand, within ABZR87_RS18360at 486.114 kb on + strand, within ABZR87_RS18360at 486.114 kb on + strand, within ABZR87_RS18360at 486.114 kb on + strand, within ABZR87_RS18360at 486.114 kb on + strand, within ABZR87_RS18360at 486.144 kb on - strand, within ABZR87_RS18360at 486.144 kb on - strand, within ABZR87_RS18360at 486.156 kb on + strand, within ABZR87_RS18360at 486.156 kb on + strand, within ABZR87_RS18360at 486.156 kb on + strand, within ABZR87_RS18360at 486.156 kb on + strand, within ABZR87_RS18360at 486.157 kb on - strand, within ABZR87_RS18360at 486.159 kb on - strand, within ABZR87_RS18360at 486.174 kb on + strand, within ABZR87_RS18360at 486.174 kb on + strand, within ABZR87_RS18360at 486.174 kb on + strand, within ABZR87_RS18360at 486.175 kb on - strand, within ABZR87_RS18360at 486.175 kb on - strand, within ABZR87_RS18360at 486.201 kb on + strand, within ABZR87_RS18360at 486.201 kb on + strand, within ABZR87_RS18360at 486.201 kb on + strand, within ABZR87_RS18360at 486.201 kb on + strand, within ABZR87_RS18360at 486.201 kb on + strand, within ABZR87_RS18360at 486.202 kb on - strand, within ABZR87_RS18360at 486.202 kb on - strand, within ABZR87_RS18360at 486.202 kb on - strand, within ABZR87_RS18360at 486.202 kb on - strand, within ABZR87_RS18360at 486.202 kb on - strand, within ABZR87_RS18360at 486.202 kb on - strand, within ABZR87_RS18360at 486.202 kb on - strand, within ABZR87_RS18360at 486.205 kb on + strand, within ABZR87_RS18360at 486.205 kb on + strand, within ABZR87_RS18360at 486.205 kb on + strand, within ABZR87_RS18360at 486.206 kb on - strand, within ABZR87_RS18360at 486.288 kb on + strand, within ABZR87_RS18360at 486.360 kb on + strand, within ABZR87_RS18360at 486.360 kb on + strand, within ABZR87_RS18360at 486.360 kb on + strand, within ABZR87_RS18360at 486.361 kb on - strand, within ABZR87_RS18360at 486.361 kb on - strand, within ABZR87_RS18360at 486.411 kb on + strand, within ABZR87_RS18360at 486.411 kb on + strand, within ABZR87_RS18360at 486.411 kb on + strand, within ABZR87_RS18360at 486.411 kb on + strand, within ABZR87_RS18360at 486.412 kb on - strand, within ABZR87_RS18360at 486.412 kb on - strand, within ABZR87_RS18360at 486.412 kb on - strand, within ABZR87_RS18360at 486.412 kb on - strand, within ABZR87_RS18360at 486.446 kb on + strand, within ABZR87_RS18360at 486.446 kb on + strand, within ABZR87_RS18360at 486.446 kb on + strand, within ABZR87_RS18360at 486.446 kb on + strand, within ABZR87_RS18360at 486.690 kb on - strandat 486.772 kb on + strandat 486.773 kb on - strandat 486.786 kb on + strandat 486.786 kb on + strandat 486.786 kb on + strandat 486.787 kb on - strandat 486.787 kb on - strandat 486.849 kb on + strandat 486.851 kb on + strandat 486.871 kb on + strandat 487.396 kb on + strand, within ABZR87_RS18365at 487.397 kb on - strand, within ABZR87_RS18365at 487.397 kb on - strand, within ABZR87_RS18365at 487.445 kb on - strand, within ABZR87_RS18365at 487.720 kb on + strand, within ABZR87_RS18365at 487.721 kb on - strand, within ABZR87_RS18365at 487.721 kb on - strand, within ABZR87_RS18365at 487.762 kb on + strand, within ABZR87_RS18365at 487.785 kb on + strandat 487.785 kb on + strandat 487.786 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB
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484,724 + -1.4
484,791 + ABZR87_RS18355 0.12 +0.5
484,791 + ABZR87_RS18355 0.12 +0.2
484,805 - ABZR87_RS18355 0.13 +0.1
484,896 + ABZR87_RS18355 0.22 -1.3
484,897 - ABZR87_RS18355 0.22 -0.7
484,987 + ABZR87_RS18355 0.30 -0.2
484,987 + ABZR87_RS18355 0.30 -2.3
484,987 + ABZR87_RS18355 0.30 +0.2
484,988 - ABZR87_RS18355 0.30 -0.7
485,174 - ABZR87_RS18355 0.48 +0.4
485,174 - ABZR87_RS18355 0.48 -3.1
485,176 + ABZR87_RS18355 0.48 -0.4
485,176 + ABZR87_RS18355 0.48 +0.3
485,177 - ABZR87_RS18355 0.48 -0.2
485,207 - ABZR87_RS18355 0.51 +0.7
485,207 - ABZR87_RS18355 0.51 +2.2
485,233 + ABZR87_RS18355 0.54 +0.0
485,233 + ABZR87_RS18355 0.54 +0.5
485,374 + ABZR87_RS18355 0.67 +0.6
485,374 + ABZR87_RS18355 0.67 +0.8
485,375 - ABZR87_RS18355 0.67 -0.5
485,375 - ABZR87_RS18355 0.67 +0.9
485,375 - ABZR87_RS18355 0.67 -1.2
485,375 - ABZR87_RS18355 0.67 -0.7
485,576 - ABZR87_RS18355 0.86 +0.0
485,584 + ABZR87_RS18355 0.87 -0.4
485,585 - ABZR87_RS18355 0.87 -0.5
485,745 + -0.8
485,796 + +0.1
485,796 + -0.4
485,909 - ABZR87_RS18360 0.18 -1.5
485,909 - ABZR87_RS18360 0.18 +0.7
486,005 - ABZR87_RS18360 0.27 -0.8
486,114 + ABZR87_RS18360 0.37 -0.1
486,114 + ABZR87_RS18360 0.37 +0.5
486,114 + ABZR87_RS18360 0.37 +0.2
486,114 + ABZR87_RS18360 0.37 -0.8
486,144 - ABZR87_RS18360 0.40 -0.8
486,144 - ABZR87_RS18360 0.40 +0.1
486,156 + ABZR87_RS18360 0.41 -0.1
486,156 + ABZR87_RS18360 0.41 -0.1
486,156 + ABZR87_RS18360 0.41 -2.8
486,156 + ABZR87_RS18360 0.41 +1.1
486,157 - ABZR87_RS18360 0.41 -1.1
486,159 - ABZR87_RS18360 0.41 +0.2
486,174 + ABZR87_RS18360 0.43 -0.1
486,174 + ABZR87_RS18360 0.43 -1.5
486,174 + ABZR87_RS18360 0.43 -1.1
486,175 - ABZR87_RS18360 0.43 +0.8
486,175 - ABZR87_RS18360 0.43 +1.3
486,201 + ABZR87_RS18360 0.45 +0.0
486,201 + ABZR87_RS18360 0.45 -3.6
486,201 + ABZR87_RS18360 0.45 +0.3
486,201 + ABZR87_RS18360 0.45 +0.7
486,201 + ABZR87_RS18360 0.45 -2.0
486,202 - ABZR87_RS18360 0.45 -1.2
486,202 - ABZR87_RS18360 0.45 +0.7
486,202 - ABZR87_RS18360 0.45 -0.1
486,202 - ABZR87_RS18360 0.45 +0.4
486,202 - ABZR87_RS18360 0.45 -1.2
486,202 - ABZR87_RS18360 0.45 -0.0
486,202 - ABZR87_RS18360 0.45 -0.5
486,205 + ABZR87_RS18360 0.46 -0.1
486,205 + ABZR87_RS18360 0.46 -2.6
486,205 + ABZR87_RS18360 0.46 -0.3
486,206 - ABZR87_RS18360 0.46 -0.4
486,288 + ABZR87_RS18360 0.53 +0.5
486,360 + ABZR87_RS18360 0.60 +0.8
486,360 + ABZR87_RS18360 0.60 +0.1
486,360 + ABZR87_RS18360 0.60 +0.3
486,361 - ABZR87_RS18360 0.60 +0.2
486,361 - ABZR87_RS18360 0.60 +1.5
486,411 + ABZR87_RS18360 0.65 -1.1
486,411 + ABZR87_RS18360 0.65 -1.1
486,411 + ABZR87_RS18360 0.65 -0.6
486,411 + ABZR87_RS18360 0.65 -2.4
486,412 - ABZR87_RS18360 0.65 +0.9
486,412 - ABZR87_RS18360 0.65 -0.9
486,412 - ABZR87_RS18360 0.65 -2.5
486,412 - ABZR87_RS18360 0.65 -1.6
486,446 + ABZR87_RS18360 0.68 -0.4
486,446 + ABZR87_RS18360 0.68 +0.7
486,446 + ABZR87_RS18360 0.68 -1.7
486,446 + ABZR87_RS18360 0.68 -1.2
486,690 - +0.6
486,772 + +0.1
486,773 - +0.2
486,786 + +0.6
486,786 + +0.9
486,786 + +0.1
486,787 - -0.1
486,787 - +1.7
486,849 + -2.7
486,851 + -0.4
486,871 + -2.0
487,396 + ABZR87_RS18365 0.52 +1.3
487,397 - ABZR87_RS18365 0.52 -0.0
487,397 - ABZR87_RS18365 0.52 -1.9
487,445 - ABZR87_RS18365 0.57 +0.9
487,720 + ABZR87_RS18365 0.86 +0.4
487,721 - ABZR87_RS18365 0.86 -0.5
487,721 - ABZR87_RS18365 0.86 -0.6
487,762 + ABZR87_RS18365 0.90 +0.7
487,785 + +0.5
487,785 + -1.2
487,786 - -3.2

Or see this region's nucleotide sequence