Experiment: soil EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18060 and ABZR87_RS18065 are separated by 230 nucleotides ABZR87_RS18065 and ABZR87_RS18070 are separated by 296 nucleotides
ABZR87_RS18060: ABZR87_RS18060 - LysM domain-containing protein, at 408,088 to 418,467
_RS18060
ABZR87_RS18065: ABZR87_RS18065 - LuxR family transcriptional regulator, at 418,698 to 419,600
_RS18065
ABZR87_RS18070: ABZR87_RS18070 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 419,897 to 420,940
_RS18070
Position (kb) 418
419
420 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 417.728 kb on + strand at 417.728 kb on + strand at 417.729 kb on - strand at 417.729 kb on - strand at 417.996 kb on + strand at 418.061 kb on + strand at 418.215 kb on - strand at 418.238 kb on + strand at 418.238 kb on + strand at 418.239 kb on - strand at 418.391 kb on + strand at 418.391 kb on + strand at 418.429 kb on - strand at 418.480 kb on + strand at 418.481 kb on - strand at 418.481 kb on - strand at 418.622 kb on - strand at 418.622 kb on - strand at 418.632 kb on - strand at 418.649 kb on + strand at 418.649 kb on + strand at 418.649 kb on + strand at 418.649 kb on + strand at 418.649 kb on + strand at 418.650 kb on - strand at 418.650 kb on - strand at 419.272 kb on + strand, within ABZR87_RS18065 at 419.272 kb on + strand, within ABZR87_RS18065 at 419.273 kb on - strand, within ABZR87_RS18065 at 419.273 kb on - strand, within ABZR87_RS18065 at 419.273 kb on - strand, within ABZR87_RS18065 at 419.329 kb on + strand, within ABZR87_RS18065 at 419.330 kb on - strand, within ABZR87_RS18065 at 419.330 kb on - strand, within ABZR87_RS18065 at 419.330 kb on - strand, within ABZR87_RS18065 at 419.796 kb on + strand at 419.797 kb on - strand at 420.145 kb on - strand, within ABZR87_RS18070 at 420.156 kb on + strand, within ABZR87_RS18070 at 420.157 kb on - strand, within ABZR87_RS18070 at 420.312 kb on + strand, within ABZR87_RS18070 at 420.312 kb on + strand, within ABZR87_RS18070 at 420.312 kb on + strand, within ABZR87_RS18070 at 420.313 kb on - strand, within ABZR87_RS18070 at 420.313 kb on - strand, within ABZR87_RS18070 at 420.334 kb on - strand, within ABZR87_RS18070 at 420.334 kb on - strand, within ABZR87_RS18070 at 420.334 kb on - strand, within ABZR87_RS18070 at 420.350 kb on + strand, within ABZR87_RS18070 at 420.350 kb on + strand, within ABZR87_RS18070
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB remove 417,728 + -0.4 417,728 + +0.3 417,729 - +0.2 417,729 - +0.6 417,996 + -0.6 418,061 + +0.1 418,215 - +0.8 418,238 + -0.6 418,238 + -2.7 418,239 - +0.4 418,391 + -0.1 418,391 + -0.9 418,429 - +0.6 418,480 + -2.5 418,481 - +1.5 418,481 - -1.3 418,622 - +0.2 418,622 - -2.0 418,632 - +2.1 418,649 + -1.0 418,649 + -0.3 418,649 + +0.1 418,649 + +1.0 418,649 + +0.3 418,650 - -0.6 418,650 - -0.2 419,272 + ABZR87_RS18065 0.64 +0.6 419,272 + ABZR87_RS18065 0.64 -0.8 419,273 - ABZR87_RS18065 0.64 -0.9 419,273 - ABZR87_RS18065 0.64 -1.9 419,273 - ABZR87_RS18065 0.64 +1.0 419,329 + ABZR87_RS18065 0.70 -3.2 419,330 - ABZR87_RS18065 0.70 -1.2 419,330 - ABZR87_RS18065 0.70 -0.6 419,330 - ABZR87_RS18065 0.70 -0.4 419,796 + -0.7 419,797 - +0.4 420,145 - ABZR87_RS18070 0.24 -1.0 420,156 + ABZR87_RS18070 0.25 -0.7 420,157 - ABZR87_RS18070 0.25 +0.1 420,312 + ABZR87_RS18070 0.40 +0.5 420,312 + ABZR87_RS18070 0.40 -0.0 420,312 + ABZR87_RS18070 0.40 -0.5 420,313 - ABZR87_RS18070 0.40 +1.8 420,313 - ABZR87_RS18070 0.40 +0.8 420,334 - ABZR87_RS18070 0.42 +1.3 420,334 - ABZR87_RS18070 0.42 -1.1 420,334 - ABZR87_RS18070 0.42 -0.3 420,350 + ABZR87_RS18070 0.43 -1.8 420,350 + ABZR87_RS18070 0.43 +1.6
Or see this region's nucleotide sequence