Experiment: soil EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17770 and ABZR87_RS17775 are separated by 22 nucleotides ABZR87_RS17775 and ABZR87_RS17780 are separated by 162 nucleotides
ABZR87_RS17770: ABZR87_RS17770 - LLM class flavin-dependent oxidoreductase, at 347,322 to 348,668
_RS17770
ABZR87_RS17775: ABZR87_RS17775 - acyl-CoA dehydrogenase family protein, at 348,691 to 349,908
_RS17775
ABZR87_RS17780: ABZR87_RS17780 - LysR family transcriptional regulator, at 350,071 to 350,955
_RS17780
Position (kb) 348
349
350 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 347.775 kb on + strand, within ABZR87_RS17770 at 348.069 kb on + strand, within ABZR87_RS17770 at 348.069 kb on + strand, within ABZR87_RS17770 at 348.070 kb on - strand, within ABZR87_RS17770 at 348.219 kb on + strand, within ABZR87_RS17770 at 348.380 kb on - strand, within ABZR87_RS17770 at 348.591 kb on + strand at 348.591 kb on + strand at 348.690 kb on + strand at 348.690 kb on + strand at 348.691 kb on - strand at 348.696 kb on + strand at 348.696 kb on + strand at 348.970 kb on + strand, within ABZR87_RS17775 at 348.970 kb on + strand, within ABZR87_RS17775 at 348.970 kb on + strand, within ABZR87_RS17775 at 348.970 kb on + strand, within ABZR87_RS17775 at 348.970 kb on + strand, within ABZR87_RS17775 at 349.153 kb on + strand, within ABZR87_RS17775 at 349.154 kb on - strand, within ABZR87_RS17775 at 349.156 kb on + strand, within ABZR87_RS17775 at 349.156 kb on + strand, within ABZR87_RS17775 at 349.157 kb on - strand, within ABZR87_RS17775 at 349.183 kb on + strand, within ABZR87_RS17775 at 349.465 kb on + strand, within ABZR87_RS17775 at 349.465 kb on + strand, within ABZR87_RS17775 at 349.465 kb on + strand, within ABZR87_RS17775 at 349.466 kb on - strand, within ABZR87_RS17775 at 349.466 kb on - strand, within ABZR87_RS17775 at 349.858 kb on + strand at 349.858 kb on + strand at 350.031 kb on + strand at 350.031 kb on + strand at 350.031 kb on + strand at 350.032 kb on - strand at 350.293 kb on + strand, within ABZR87_RS17780 at 350.294 kb on - strand, within ABZR87_RS17780 at 350.294 kb on - strand, within ABZR87_RS17780 at 350.554 kb on + strand, within ABZR87_RS17780 at 350.555 kb on - strand, within ABZR87_RS17780 at 350.555 kb on - strand, within ABZR87_RS17780 at 350.590 kb on + strand, within ABZR87_RS17780 at 350.591 kb on - strand, within ABZR87_RS17780 at 350.591 kb on - strand, within ABZR87_RS17780 at 350.591 kb on - strand, within ABZR87_RS17780
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB remove 347,775 + ABZR87_RS17770 0.34 +1.5 348,069 + ABZR87_RS17770 0.55 +0.0 348,069 + ABZR87_RS17770 0.55 +0.3 348,070 - ABZR87_RS17770 0.56 -3.1 348,219 + ABZR87_RS17770 0.67 -2.5 348,380 - ABZR87_RS17770 0.79 +1.7 348,591 + -1.6 348,591 + -0.5 348,690 + -0.6 348,690 + -0.4 348,691 - -0.4 348,696 + +0.9 348,696 + -0.1 348,970 + ABZR87_RS17775 0.23 -2.9 348,970 + ABZR87_RS17775 0.23 +0.5 348,970 + ABZR87_RS17775 0.23 -0.2 348,970 + ABZR87_RS17775 0.23 -1.8 348,970 + ABZR87_RS17775 0.23 -1.3 349,153 + ABZR87_RS17775 0.38 +0.2 349,154 - ABZR87_RS17775 0.38 -4.2 349,156 + ABZR87_RS17775 0.38 +0.6 349,156 + ABZR87_RS17775 0.38 -0.8 349,157 - ABZR87_RS17775 0.38 -2.7 349,183 + ABZR87_RS17775 0.40 -0.9 349,465 + ABZR87_RS17775 0.64 -0.0 349,465 + ABZR87_RS17775 0.64 +0.6 349,465 + ABZR87_RS17775 0.64 +1.3 349,466 - ABZR87_RS17775 0.64 -1.1 349,466 - ABZR87_RS17775 0.64 +1.0 349,858 + +0.2 349,858 + -3.6 350,031 + +0.4 350,031 + +0.7 350,031 + -2.1 350,032 - -0.9 350,293 + ABZR87_RS17780 0.25 +0.5 350,294 - ABZR87_RS17780 0.25 +1.0 350,294 - ABZR87_RS17780 0.25 +0.8 350,554 + ABZR87_RS17780 0.55 -1.7 350,555 - ABZR87_RS17780 0.55 +0.4 350,555 - ABZR87_RS17780 0.55 -2.2 350,590 + ABZR87_RS17780 0.59 +1.1 350,591 - ABZR87_RS17780 0.59 -0.9 350,591 - ABZR87_RS17780 0.59 -0.5 350,591 - ABZR87_RS17780 0.59 +0.5
Or see this region's nucleotide sequence