Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16765

Experiment: soil EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16760 and ABZR87_RS16765 are separated by 23 nucleotidesABZR87_RS16765 and ABZR87_RS16770 are separated by 205 nucleotides ABZR87_RS16760: ABZR87_RS16760 - GGDEF domain-containing protein, at 111,222 to 112,568 _RS16760 ABZR87_RS16765: ABZR87_RS16765 - isochorismatase family cysteine hydrolase, at 112,592 to 113,161 _RS16765 ABZR87_RS16770: ABZR87_RS16770 - HD domain-containing phosphohydrolase, at 113,367 to 116,309 _RS16770 Position (kb) 112 113 114Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 112.067 kb on + strand, within ABZR87_RS16760at 112.524 kb on + strandat 112.524 kb on + strandat 112.524 kb on + strandat 112.524 kb on + strandat 112.524 kb on + strandat 112.524 kb on + strandat 112.525 kb on - strandat 112.525 kb on - strandat 112.594 kb on - strandat 112.692 kb on + strand, within ABZR87_RS16765at 112.692 kb on + strand, within ABZR87_RS16765at 112.692 kb on + strand, within ABZR87_RS16765at 112.692 kb on + strand, within ABZR87_RS16765at 112.693 kb on - strand, within ABZR87_RS16765at 112.722 kb on + strand, within ABZR87_RS16765at 112.795 kb on + strand, within ABZR87_RS16765at 112.795 kb on + strand, within ABZR87_RS16765at 112.795 kb on + strand, within ABZR87_RS16765at 112.795 kb on + strand, within ABZR87_RS16765at 112.795 kb on + strand, within ABZR87_RS16765at 112.796 kb on - strand, within ABZR87_RS16765at 112.796 kb on - strand, within ABZR87_RS16765at 112.796 kb on - strand, within ABZR87_RS16765at 112.796 kb on - strand, within ABZR87_RS16765at 112.796 kb on - strand, within ABZR87_RS16765at 112.840 kb on - strand, within ABZR87_RS16765at 113.007 kb on + strand, within ABZR87_RS16765at 113.007 kb on + strand, within ABZR87_RS16765at 113.007 kb on + strand, within ABZR87_RS16765at 113.008 kb on - strand, within ABZR87_RS16765at 113.109 kb on + strandat 113.110 kb on - strandat 113.110 kb on - strandat 113.110 kb on - strandat 113.110 kb on - strandat 113.161 kb on + strandat 113.161 kb on + strandat 113.161 kb on + strandat 113.161 kb on + strandat 113.162 kb on - strandat 113.168 kb on - strandat 113.168 kb on - strandat 113.199 kb on + strandat 113.200 kb on - strandat 113.200 kb on - strandat 113.200 kb on - strandat 113.321 kb on + strandat 113.321 kb on + strandat 113.322 kb on - strandat 113.342 kb on + strandat 113.342 kb on + strandat 113.343 kb on - strandat 113.343 kb on - strandat 113.345 kb on + strandat 113.346 kb on - strandat 113.428 kb on + strandat 113.428 kb on + strandat 113.429 kb on - strandat 113.429 kb on - strandat 113.647 kb on + strandat 113.647 kb on + strandat 113.648 kb on - strandat 113.648 kb on - strandat 113.688 kb on + strand, within ABZR87_RS16770at 113.688 kb on + strand, within ABZR87_RS16770at 113.688 kb on + strand, within ABZR87_RS16770at 113.688 kb on + strand, within ABZR87_RS16770at 113.688 kb on + strand, within ABZR87_RS16770at 113.688 kb on + strand, within ABZR87_RS16770at 113.688 kb on + strand, within ABZR87_RS16770at 113.688 kb on + strand, within ABZR87_RS16770at 113.688 kb on + strand, within ABZR87_RS16770at 113.689 kb on - strand, within ABZR87_RS16770at 113.689 kb on - strand, within ABZR87_RS16770at 113.689 kb on - strand, within ABZR87_RS16770at 113.689 kb on - strand, within ABZR87_RS16770at 113.689 kb on - strand, within ABZR87_RS16770at 113.689 kb on - strand, within ABZR87_RS16770at 113.689 kb on - strand, within ABZR87_RS16770at 113.689 kb on - strand, within ABZR87_RS16770at 113.689 kb on - strand, within ABZR87_RS16770at 113.689 kb on - strand, within ABZR87_RS16770at 113.689 kb on - strand, within ABZR87_RS16770at 113.689 kb on - strand, within ABZR87_RS16770at 113.718 kb on + strand, within ABZR87_RS16770at 113.719 kb on - strand, within ABZR87_RS16770at 113.719 kb on - strand, within ABZR87_RS16770at 113.719 kb on - strand, within ABZR87_RS16770at 113.781 kb on + strand, within ABZR87_RS16770at 113.781 kb on + strand, within ABZR87_RS16770at 113.781 kb on + strand, within ABZR87_RS16770at 113.781 kb on + strand, within ABZR87_RS16770at 113.781 kb on + strand, within ABZR87_RS16770at 113.781 kb on + strand, within ABZR87_RS16770at 113.781 kb on + strand, within ABZR87_RS16770at 113.781 kb on + strand, within ABZR87_RS16770at 113.781 kb on + strand, within ABZR87_RS16770at 113.781 kb on + strand, within ABZR87_RS16770at 113.782 kb on - strand, within ABZR87_RS16770at 113.782 kb on - strand, within ABZR87_RS16770at 113.919 kb on + strand, within ABZR87_RS16770at 113.919 kb on + strand, within ABZR87_RS16770at 113.919 kb on + strand, within ABZR87_RS16770at 113.919 kb on + strand, within ABZR87_RS16770at 113.919 kb on + strand, within ABZR87_RS16770at 113.919 kb on + strand, within ABZR87_RS16770at 113.919 kb on + strand, within ABZR87_RS16770at 113.920 kb on - strand, within ABZR87_RS16770at 113.920 kb on - strand, within ABZR87_RS16770at 113.964 kb on + strand, within ABZR87_RS16770at 113.964 kb on + strand, within ABZR87_RS16770at 113.964 kb on + strand, within ABZR87_RS16770at 113.964 kb on + strand, within ABZR87_RS16770at 113.964 kb on + strand, within ABZR87_RS16770at 113.965 kb on - strand, within ABZR87_RS16770at 113.965 kb on - strand, within ABZR87_RS16770at 113.965 kb on - strand, within ABZR87_RS16770

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB
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112,067 + ABZR87_RS16760 0.63 -0.5
112,524 + -0.5
112,524 + +0.7
112,524 + +1.2
112,524 + +2.2
112,524 + -0.8
112,524 + +0.1
112,525 - -2.8
112,525 - +0.2
112,594 - -0.1
112,692 + ABZR87_RS16765 0.18 +1.8
112,692 + ABZR87_RS16765 0.18 -1.2
112,692 + ABZR87_RS16765 0.18 +0.6
112,692 + ABZR87_RS16765 0.18 +0.0
112,693 - ABZR87_RS16765 0.18 +0.8
112,722 + ABZR87_RS16765 0.23 -1.3
112,795 + ABZR87_RS16765 0.36 -2.7
112,795 + ABZR87_RS16765 0.36 -1.2
112,795 + ABZR87_RS16765 0.36 -1.2
112,795 + ABZR87_RS16765 0.36 -0.3
112,795 + ABZR87_RS16765 0.36 -0.5
112,796 - ABZR87_RS16765 0.36 +1.8
112,796 - ABZR87_RS16765 0.36 -0.7
112,796 - ABZR87_RS16765 0.36 +0.3
112,796 - ABZR87_RS16765 0.36 -1.1
112,796 - ABZR87_RS16765 0.36 -0.7
112,840 - ABZR87_RS16765 0.44 -2.1
113,007 + ABZR87_RS16765 0.73 +0.2
113,007 + ABZR87_RS16765 0.73 -2.2
113,007 + ABZR87_RS16765 0.73 -0.3
113,008 - ABZR87_RS16765 0.73 +1.1
113,109 + -1.4
113,110 - +1.4
113,110 - -0.6
113,110 - -0.4
113,110 - +2.0
113,161 + -1.4
113,161 + -0.4
113,161 + -2.0
113,161 + -0.3
113,162 - -1.5
113,168 - -0.5
113,168 - -0.5
113,199 + +0.6
113,200 - -1.6
113,200 - +0.3
113,200 - +0.8
113,321 + +1.0
113,321 + -2.5
113,322 - -0.3
113,342 + -1.3
113,342 + -0.4
113,343 - -0.5
113,343 - +1.0
113,345 + -0.6
113,346 - +0.9
113,428 + +1.1
113,428 + +1.3
113,429 - +0.7
113,429 - -0.1
113,647 + +0.6
113,647 + -1.8
113,648 - -0.8
113,648 - -0.2
113,688 + ABZR87_RS16770 0.11 -0.2
113,688 + ABZR87_RS16770 0.11 -1.2
113,688 + ABZR87_RS16770 0.11 +0.7
113,688 + ABZR87_RS16770 0.11 -0.3
113,688 + ABZR87_RS16770 0.11 -2.0
113,688 + ABZR87_RS16770 0.11 +1.2
113,688 + ABZR87_RS16770 0.11 +1.6
113,688 + ABZR87_RS16770 0.11 -0.9
113,688 + ABZR87_RS16770 0.11 -0.1
113,689 - ABZR87_RS16770 0.11 +1.1
113,689 - ABZR87_RS16770 0.11 -1.0
113,689 - ABZR87_RS16770 0.11 -0.5
113,689 - ABZR87_RS16770 0.11 -0.0
113,689 - ABZR87_RS16770 0.11 +0.2
113,689 - ABZR87_RS16770 0.11 -0.2
113,689 - ABZR87_RS16770 0.11 -0.1
113,689 - ABZR87_RS16770 0.11 +1.7
113,689 - ABZR87_RS16770 0.11 -0.3
113,689 - ABZR87_RS16770 0.11 +1.0
113,689 - ABZR87_RS16770 0.11 +0.4
113,689 - ABZR87_RS16770 0.11 -0.3
113,718 + ABZR87_RS16770 0.12 -0.0
113,719 - ABZR87_RS16770 0.12 -1.0
113,719 - ABZR87_RS16770 0.12 -0.7
113,719 - ABZR87_RS16770 0.12 +1.0
113,781 + ABZR87_RS16770 0.14 -0.4
113,781 + ABZR87_RS16770 0.14 +0.9
113,781 + ABZR87_RS16770 0.14 +1.2
113,781 + ABZR87_RS16770 0.14 -0.9
113,781 + ABZR87_RS16770 0.14 +0.4
113,781 + ABZR87_RS16770 0.14 -1.0
113,781 + ABZR87_RS16770 0.14 +0.9
113,781 + ABZR87_RS16770 0.14 -0.8
113,781 + ABZR87_RS16770 0.14 -0.4
113,781 + ABZR87_RS16770 0.14 -0.6
113,782 - ABZR87_RS16770 0.14 +0.4
113,782 - ABZR87_RS16770 0.14 +1.2
113,919 + ABZR87_RS16770 0.19 +0.7
113,919 + ABZR87_RS16770 0.19 +1.0
113,919 + ABZR87_RS16770 0.19 -1.4
113,919 + ABZR87_RS16770 0.19 +0.1
113,919 + ABZR87_RS16770 0.19 +0.3
113,919 + ABZR87_RS16770 0.19 -1.4
113,919 + ABZR87_RS16770 0.19 +0.7
113,920 - ABZR87_RS16770 0.19 +0.7
113,920 - ABZR87_RS16770 0.19 +0.7
113,964 + ABZR87_RS16770 0.20 -2.9
113,964 + ABZR87_RS16770 0.20 -0.3
113,964 + ABZR87_RS16770 0.20 +1.9
113,964 + ABZR87_RS16770 0.20 +1.0
113,964 + ABZR87_RS16770 0.20 -1.6
113,965 - ABZR87_RS16770 0.20 -2.2
113,965 - ABZR87_RS16770 0.20 -4.2
113,965 - ABZR87_RS16770 0.20 -0.0

Or see this region's nucleotide sequence