Experiment: soil EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS15210 and ABZR87_RS15215 are separated by 9 nucleotides ABZR87_RS15215 and ABZR87_RS15220 are separated by 115 nucleotides ABZR87_RS15220 and ABZR87_RS15225 are separated by 172 nucleotides
ABZR87_RS15210: ABZR87_RS15210 - DMT family transporter, at 3,206,153 to 3,206,986
_RS15210
ABZR87_RS15215: ABZR87_RS15215 - transcription elongation factor GreB, at 3,206,996 to 3,207,559
_RS15215
ABZR87_RS15220: ABZR87_RS15220 - tRNA-Arg, at 3,207,675 to 3,207,751
_RS15220
ABZR87_RS15225: ABZR87_RS15225 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 3,207,924 to 3,210,344
_RS15225
Position (kb) 3207
3208 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3206.802 kb on - strand, within ABZR87_RS15210 at 3206.874 kb on + strand, within ABZR87_RS15210 at 3206.874 kb on + strand, within ABZR87_RS15210 at 3206.874 kb on + strand, within ABZR87_RS15210 at 3206.874 kb on + strand, within ABZR87_RS15210 at 3206.874 kb on + strand, within ABZR87_RS15210 at 3206.874 kb on + strand, within ABZR87_RS15210 at 3206.875 kb on - strand, within ABZR87_RS15210 at 3206.875 kb on - strand, within ABZR87_RS15210 at 3206.963 kb on + strand at 3207.015 kb on + strand at 3207.015 kb on + strand at 3207.015 kb on + strand at 3207.074 kb on - strand, within ABZR87_RS15215 at 3207.201 kb on + strand, within ABZR87_RS15215 at 3207.202 kb on - strand, within ABZR87_RS15215 at 3207.202 kb on - strand, within ABZR87_RS15215 at 3207.202 kb on - strand, within ABZR87_RS15215 at 3207.202 kb on - strand, within ABZR87_RS15215 at 3207.202 kb on - strand, within ABZR87_RS15215 at 3207.286 kb on + strand, within ABZR87_RS15215 at 3207.287 kb on - strand, within ABZR87_RS15215 at 3207.334 kb on - strand, within ABZR87_RS15215 at 3207.340 kb on - strand, within ABZR87_RS15215 at 3207.468 kb on + strand, within ABZR87_RS15215 at 3207.468 kb on + strand, within ABZR87_RS15215 at 3207.468 kb on + strand, within ABZR87_RS15215 at 3207.469 kb on - strand, within ABZR87_RS15215 at 3207.469 kb on - strand, within ABZR87_RS15215 at 3207.469 kb on - strand, within ABZR87_RS15215 at 3207.469 kb on - strand, within ABZR87_RS15215 at 3207.591 kb on - strand at 3207.592 kb on + strand at 3207.593 kb on - strand at 3207.593 kb on - strand at 3207.755 kb on + strand at 3207.755 kb on + strand at 3207.755 kb on + strand at 3207.756 kb on - strand at 3207.756 kb on - strand at 3207.758 kb on + strand at 3207.829 kb on + strand at 3207.829 kb on + strand at 3207.829 kb on + strand at 3207.851 kb on + strand at 3207.851 kb on + strand at 3207.851 kb on + strand at 3207.852 kb on - strand at 3207.947 kb on + strand at 3207.947 kb on + strand at 3207.951 kb on - strand at 3207.951 kb on - strand at 3208.036 kb on + strand at 3208.036 kb on + strand at 3208.036 kb on + strand at 3208.036 kb on + strand at 3208.036 kb on + strand at 3208.037 kb on - strand at 3208.037 kb on - strand at 3208.037 kb on - strand at 3208.037 kb on - strand at 3208.037 kb on - strand at 3208.037 kb on - strand at 3208.136 kb on + strand at 3208.136 kb on + strand at 3208.136 kb on + strand at 3208.291 kb on + strand, within ABZR87_RS15225 at 3208.291 kb on + strand, within ABZR87_RS15225 at 3208.404 kb on + strand, within ABZR87_RS15225 at 3208.404 kb on + strand, within ABZR87_RS15225 at 3208.405 kb on - strand, within ABZR87_RS15225 at 3208.405 kb on - strand, within ABZR87_RS15225 at 3208.405 kb on - strand, within ABZR87_RS15225
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB remove 3,206,802 - ABZR87_RS15210 0.78 +0.3 3,206,874 + ABZR87_RS15210 0.86 +0.3 3,206,874 + ABZR87_RS15210 0.86 +0.6 3,206,874 + ABZR87_RS15210 0.86 -1.1 3,206,874 + ABZR87_RS15210 0.86 -0.6 3,206,874 + ABZR87_RS15210 0.86 -0.9 3,206,874 + ABZR87_RS15210 0.86 +0.8 3,206,875 - ABZR87_RS15210 0.87 +0.3 3,206,875 - ABZR87_RS15210 0.87 +0.5 3,206,963 + -0.0 3,207,015 + +1.8 3,207,015 + +0.3 3,207,015 + +0.0 3,207,074 - ABZR87_RS15215 0.14 +0.9 3,207,201 + ABZR87_RS15215 0.36 -0.6 3,207,202 - ABZR87_RS15215 0.37 -0.2 3,207,202 - ABZR87_RS15215 0.37 -0.2 3,207,202 - ABZR87_RS15215 0.37 -2.2 3,207,202 - ABZR87_RS15215 0.37 +0.0 3,207,202 - ABZR87_RS15215 0.37 +0.2 3,207,286 + ABZR87_RS15215 0.51 +0.2 3,207,287 - ABZR87_RS15215 0.52 +0.8 3,207,334 - ABZR87_RS15215 0.60 -0.8 3,207,340 - ABZR87_RS15215 0.61 -1.4 3,207,468 + ABZR87_RS15215 0.84 -2.5 3,207,468 + ABZR87_RS15215 0.84 +1.0 3,207,468 + ABZR87_RS15215 0.84 -1.5 3,207,469 - ABZR87_RS15215 0.84 +0.1 3,207,469 - ABZR87_RS15215 0.84 -1.2 3,207,469 - ABZR87_RS15215 0.84 -0.4 3,207,469 - ABZR87_RS15215 0.84 -0.0 3,207,591 - -0.9 3,207,592 + -0.7 3,207,593 - -3.1 3,207,593 - +2.2 3,207,755 + -0.5 3,207,755 + -1.5 3,207,755 + -2.6 3,207,756 - -1.1 3,207,756 - -2.6 3,207,758 + -1.1 3,207,829 + +0.4 3,207,829 + -2.8 3,207,829 + -1.0 3,207,851 + +0.4 3,207,851 + +0.3 3,207,851 + -0.5 3,207,852 - -1.1 3,207,947 + -1.6 3,207,947 + -0.5 3,207,951 - +1.1 3,207,951 - -1.2 3,208,036 + +0.1 3,208,036 + -1.3 3,208,036 + +0.5 3,208,036 + -0.0 3,208,036 + +0.2 3,208,037 - -0.0 3,208,037 - -1.2 3,208,037 - +0.6 3,208,037 - -1.6 3,208,037 - -0.5 3,208,037 - +1.5 3,208,136 + -1.4 3,208,136 + -2.8 3,208,136 + -2.5 3,208,291 + ABZR87_RS15225 0.15 -1.2 3,208,291 + ABZR87_RS15225 0.15 -1.8 3,208,404 + ABZR87_RS15225 0.20 -0.8 3,208,404 + ABZR87_RS15225 0.20 +0.2 3,208,405 - ABZR87_RS15225 0.20 -0.4 3,208,405 - ABZR87_RS15225 0.20 -0.9 3,208,405 - ABZR87_RS15225 0.20 -0.5
Or see this region's nucleotide sequence