Experiment: soil EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09300 and ABZR87_RS09305 overlap by 4 nucleotides ABZR87_RS09305 and ABZR87_RS09310 are separated by 233 nucleotides
ABZR87_RS09300: ABZR87_RS09300 - hypothetical protein, at 1,969,920 to 1,971,035
_RS09300
ABZR87_RS09305: ABZR87_RS09305 - purine nucleoside permease, at 1,971,032 to 1,972,081
_RS09305
ABZR87_RS09310: ABZR87_RS09310 - TonB-dependent siderophore receptor, at 1,972,315 to 1,974,423
_RS09310
Position (kb) 1971
1972
1973 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1970.292 kb on + strand, within ABZR87_RS09300 at 1970.293 kb on - strand, within ABZR87_RS09300 at 1970.323 kb on - strand, within ABZR87_RS09300 at 1970.323 kb on - strand, within ABZR87_RS09300 at 1970.511 kb on + strand, within ABZR87_RS09300 at 1970.511 kb on + strand, within ABZR87_RS09300 at 1970.511 kb on + strand, within ABZR87_RS09300 at 1970.512 kb on - strand, within ABZR87_RS09300 at 1970.623 kb on - strand, within ABZR87_RS09300 at 1970.623 kb on - strand, within ABZR87_RS09300 at 1970.623 kb on - strand, within ABZR87_RS09300 at 1970.688 kb on + strand, within ABZR87_RS09300 at 1970.688 kb on + strand, within ABZR87_RS09300 at 1970.688 kb on + strand, within ABZR87_RS09300 at 1970.689 kb on - strand, within ABZR87_RS09300 at 1970.689 kb on - strand, within ABZR87_RS09300 at 1970.760 kb on + strand, within ABZR87_RS09300 at 1970.760 kb on + strand, within ABZR87_RS09300 at 1970.760 kb on + strand, within ABZR87_RS09300 at 1970.760 kb on + strand, within ABZR87_RS09300 at 1970.760 kb on + strand, within ABZR87_RS09300 at 1970.761 kb on - strand, within ABZR87_RS09300 at 1970.761 kb on - strand, within ABZR87_RS09300 at 1970.761 kb on - strand, within ABZR87_RS09300 at 1970.884 kb on - strand, within ABZR87_RS09300 at 1970.901 kb on + strand, within ABZR87_RS09300 at 1970.902 kb on - strand, within ABZR87_RS09300 at 1970.902 kb on - strand, within ABZR87_RS09300 at 1970.958 kb on + strand at 1970.959 kb on - strand at 1971.073 kb on + strand at 1971.074 kb on - strand at 1971.074 kb on - strand at 1971.187 kb on + strand, within ABZR87_RS09305 at 1971.188 kb on - strand, within ABZR87_RS09305 at 1971.198 kb on - strand, within ABZR87_RS09305 at 1971.218 kb on + strand, within ABZR87_RS09305 at 1971.218 kb on + strand, within ABZR87_RS09305 at 1971.218 kb on + strand, within ABZR87_RS09305 at 1971.218 kb on + strand, within ABZR87_RS09305 at 1971.218 kb on + strand, within ABZR87_RS09305 at 1971.219 kb on - strand, within ABZR87_RS09305 at 1971.219 kb on - strand, within ABZR87_RS09305 at 1971.219 kb on - strand, within ABZR87_RS09305 at 1971.219 kb on - strand, within ABZR87_RS09305 at 1971.219 kb on - strand, within ABZR87_RS09305 at 1971.219 kb on - strand, within ABZR87_RS09305 at 1971.220 kb on + strand, within ABZR87_RS09305 at 1971.220 kb on + strand, within ABZR87_RS09305 at 1971.221 kb on - strand, within ABZR87_RS09305 at 1971.263 kb on + strand, within ABZR87_RS09305 at 1971.263 kb on + strand, within ABZR87_RS09305 at 1971.264 kb on - strand, within ABZR87_RS09305 at 1971.264 kb on - strand, within ABZR87_RS09305 at 1971.264 kb on - strand, within ABZR87_RS09305 at 1971.264 kb on - strand, within ABZR87_RS09305 at 1971.299 kb on + strand, within ABZR87_RS09305 at 1971.299 kb on + strand, within ABZR87_RS09305 at 1971.300 kb on - strand, within ABZR87_RS09305 at 1971.300 kb on - strand, within ABZR87_RS09305 at 1971.365 kb on + strand, within ABZR87_RS09305 at 1971.365 kb on + strand, within ABZR87_RS09305 at 1971.365 kb on + strand, within ABZR87_RS09305 at 1971.365 kb on + strand, within ABZR87_RS09305 at 1971.365 kb on + strand, within ABZR87_RS09305 at 1971.365 kb on + strand, within ABZR87_RS09305 at 1971.365 kb on + strand, within ABZR87_RS09305 at 1971.365 kb on + strand, within ABZR87_RS09305 at 1971.501 kb on - strand, within ABZR87_RS09305 at 1971.506 kb on + strand, within ABZR87_RS09305 at 1971.507 kb on - strand, within ABZR87_RS09305 at 1971.555 kb on - strand, within ABZR87_RS09305 at 1971.602 kb on + strand, within ABZR87_RS09305 at 1971.602 kb on + strand, within ABZR87_RS09305 at 1971.603 kb on - strand, within ABZR87_RS09305 at 1971.603 kb on - strand, within ABZR87_RS09305 at 1971.665 kb on + strand, within ABZR87_RS09305 at 1971.665 kb on + strand, within ABZR87_RS09305 at 1971.665 kb on + strand, within ABZR87_RS09305 at 1971.665 kb on + strand, within ABZR87_RS09305 at 1971.666 kb on - strand, within ABZR87_RS09305 at 1971.671 kb on + strand, within ABZR87_RS09305 at 1971.803 kb on + strand, within ABZR87_RS09305 at 1971.803 kb on + strand, within ABZR87_RS09305 at 1971.804 kb on - strand, within ABZR87_RS09305 at 1971.804 kb on - strand, within ABZR87_RS09305 at 1971.927 kb on - strand, within ABZR87_RS09305 at 1971.927 kb on - strand, within ABZR87_RS09305 at 1971.962 kb on + strand, within ABZR87_RS09305 at 1971.963 kb on - strand, within ABZR87_RS09305 at 1972.080 kb on - strand at 1972.080 kb on - strand at 1972.486 kb on - strand at 1972.486 kb on - strand at 1972.608 kb on + strand, within ABZR87_RS09310 at 1972.792 kb on + strand, within ABZR87_RS09310 at 1972.793 kb on - strand, within ABZR87_RS09310 at 1972.793 kb on - strand, within ABZR87_RS09310 at 1972.793 kb on - strand, within ABZR87_RS09310 at 1972.795 kb on + strand, within ABZR87_RS09310 at 1972.795 kb on + strand, within ABZR87_RS09310 at 1972.796 kb on - strand, within ABZR87_RS09310 at 1972.796 kb on - strand, within ABZR87_RS09310 at 1972.796 kb on - strand, within ABZR87_RS09310 at 1972.801 kb on + strand, within ABZR87_RS09310 at 1972.802 kb on - strand, within ABZR87_RS09310 at 1972.946 kb on - strand, within ABZR87_RS09310 at 1972.990 kb on - strand, within ABZR87_RS09310 at 1973.080 kb on + strand, within ABZR87_RS09310
Per-strain Table
Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB remove 1,970,292 + ABZR87_RS09300 0.33 +0.1 1,970,293 - ABZR87_RS09300 0.33 -0.3 1,970,323 - ABZR87_RS09300 0.36 -2.5 1,970,323 - ABZR87_RS09300 0.36 -0.3 1,970,511 + ABZR87_RS09300 0.53 -0.1 1,970,511 + ABZR87_RS09300 0.53 +1.3 1,970,511 + ABZR87_RS09300 0.53 +0.7 1,970,512 - ABZR87_RS09300 0.53 -1.3 1,970,623 - ABZR87_RS09300 0.63 -0.1 1,970,623 - ABZR87_RS09300 0.63 -0.7 1,970,623 - ABZR87_RS09300 0.63 +0.9 1,970,688 + ABZR87_RS09300 0.69 +1.0 1,970,688 + ABZR87_RS09300 0.69 -0.8 1,970,688 + ABZR87_RS09300 0.69 +1.3 1,970,689 - ABZR87_RS09300 0.69 +1.1 1,970,689 - ABZR87_RS09300 0.69 +0.1 1,970,760 + ABZR87_RS09300 0.75 -1.0 1,970,760 + ABZR87_RS09300 0.75 -0.5 1,970,760 + ABZR87_RS09300 0.75 -1.0 1,970,760 + ABZR87_RS09300 0.75 +1.1 1,970,760 + ABZR87_RS09300 0.75 -0.6 1,970,761 - ABZR87_RS09300 0.75 +0.9 1,970,761 - ABZR87_RS09300 0.75 -0.9 1,970,761 - ABZR87_RS09300 0.75 +0.3 1,970,884 - ABZR87_RS09300 0.86 -0.7 1,970,901 + ABZR87_RS09300 0.88 -2.3 1,970,902 - ABZR87_RS09300 0.88 -0.5 1,970,902 - ABZR87_RS09300 0.88 -2.1 1,970,958 + +0.1 1,970,959 - -0.8 1,971,073 + +0.4 1,971,074 - +0.8 1,971,074 - +0.7 1,971,187 + ABZR87_RS09305 0.15 +0.0 1,971,188 - ABZR87_RS09305 0.15 -0.7 1,971,198 - ABZR87_RS09305 0.16 +0.7 1,971,218 + ABZR87_RS09305 0.18 +1.3 1,971,218 + ABZR87_RS09305 0.18 +1.5 1,971,218 + ABZR87_RS09305 0.18 -3.1 1,971,218 + ABZR87_RS09305 0.18 +0.2 1,971,218 + ABZR87_RS09305 0.18 -0.5 1,971,219 - ABZR87_RS09305 0.18 +0.9 1,971,219 - ABZR87_RS09305 0.18 -0.1 1,971,219 - ABZR87_RS09305 0.18 -1.2 1,971,219 - ABZR87_RS09305 0.18 -1.0 1,971,219 - ABZR87_RS09305 0.18 -1.1 1,971,219 - ABZR87_RS09305 0.18 +0.4 1,971,220 + ABZR87_RS09305 0.18 -2.0 1,971,220 + ABZR87_RS09305 0.18 -0.9 1,971,221 - ABZR87_RS09305 0.18 -0.3 1,971,263 + ABZR87_RS09305 0.22 -1.3 1,971,263 + ABZR87_RS09305 0.22 -0.9 1,971,264 - ABZR87_RS09305 0.22 -0.8 1,971,264 - ABZR87_RS09305 0.22 -1.1 1,971,264 - ABZR87_RS09305 0.22 -0.3 1,971,264 - ABZR87_RS09305 0.22 +3.0 1,971,299 + ABZR87_RS09305 0.25 -1.4 1,971,299 + ABZR87_RS09305 0.25 -1.3 1,971,300 - ABZR87_RS09305 0.26 +1.4 1,971,300 - ABZR87_RS09305 0.26 -2.2 1,971,365 + ABZR87_RS09305 0.32 +0.3 1,971,365 + ABZR87_RS09305 0.32 +0.6 1,971,365 + ABZR87_RS09305 0.32 +0.6 1,971,365 + ABZR87_RS09305 0.32 +0.3 1,971,365 + ABZR87_RS09305 0.32 -0.8 1,971,365 + ABZR87_RS09305 0.32 -1.1 1,971,365 + ABZR87_RS09305 0.32 +0.9 1,971,365 + ABZR87_RS09305 0.32 -2.4 1,971,501 - ABZR87_RS09305 0.45 -1.7 1,971,506 + ABZR87_RS09305 0.45 +0.1 1,971,507 - ABZR87_RS09305 0.45 -2.8 1,971,555 - ABZR87_RS09305 0.50 +0.3 1,971,602 + ABZR87_RS09305 0.54 +0.4 1,971,602 + ABZR87_RS09305 0.54 +0.1 1,971,603 - ABZR87_RS09305 0.54 -1.4 1,971,603 - ABZR87_RS09305 0.54 +0.3 1,971,665 + ABZR87_RS09305 0.60 -0.6 1,971,665 + ABZR87_RS09305 0.60 -1.0 1,971,665 + ABZR87_RS09305 0.60 +1.0 1,971,665 + ABZR87_RS09305 0.60 -0.7 1,971,666 - ABZR87_RS09305 0.60 -0.4 1,971,671 + ABZR87_RS09305 0.61 +0.9 1,971,803 + ABZR87_RS09305 0.73 +0.8 1,971,803 + ABZR87_RS09305 0.73 -0.3 1,971,804 - ABZR87_RS09305 0.74 -1.3 1,971,804 - ABZR87_RS09305 0.74 +0.2 1,971,927 - ABZR87_RS09305 0.85 -2.4 1,971,927 - ABZR87_RS09305 0.85 -0.5 1,971,962 + ABZR87_RS09305 0.89 -0.7 1,971,963 - ABZR87_RS09305 0.89 -0.1 1,972,080 - -1.1 1,972,080 - -1.3 1,972,486 - -2.2 1,972,486 - -0.5 1,972,608 + ABZR87_RS09310 0.14 -2.8 1,972,792 + ABZR87_RS09310 0.23 -0.0 1,972,793 - ABZR87_RS09310 0.23 +0.1 1,972,793 - ABZR87_RS09310 0.23 -0.4 1,972,793 - ABZR87_RS09310 0.23 -0.8 1,972,795 + ABZR87_RS09310 0.23 -0.4 1,972,795 + ABZR87_RS09310 0.23 -0.4 1,972,796 - ABZR87_RS09310 0.23 +0.4 1,972,796 - ABZR87_RS09310 0.23 -0.4 1,972,796 - ABZR87_RS09310 0.23 +0.5 1,972,801 + ABZR87_RS09310 0.23 -2.0 1,972,802 - ABZR87_RS09310 0.23 +0.8 1,972,946 - ABZR87_RS09310 0.30 -0.5 1,972,990 - ABZR87_RS09310 0.32 -0.2 1,973,080 + ABZR87_RS09310 0.36 +0.1
Or see this region's nucleotide sequence