Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08785

Experiment: soil EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08780 and ABZR87_RS08785 are separated by 156 nucleotidesABZR87_RS08785 and ABZR87_RS08790 are separated by 6 nucleotidesABZR87_RS08790 and ABZR87_RS08795 are separated by 52 nucleotides ABZR87_RS08780: ABZR87_RS08780 - TetR/AcrR family transcriptional regulator, at 1,866,309 to 1,867,076 _RS08780 ABZR87_RS08785: ABZR87_RS08785 - YkgJ family cysteine cluster protein, at 1,867,233 to 1,867,490 _RS08785 ABZR87_RS08790: ABZR87_RS08790 - DUF1439 domain-containing protein, at 1,867,497 to 1,868,090 _RS08790 ABZR87_RS08795: ABZR87_RS08795 - undecaprenyl-diphosphate phosphatase, at 1,868,143 to 1,869,024 _RS08795 Position (kb) 1867 1868Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1866.276 kb on + strandat 1866.276 kb on + strandat 1866.277 kb on - strandat 1866.277 kb on - strandat 1866.277 kb on - strandat 1866.277 kb on - strandat 1866.444 kb on + strand, within ABZR87_RS08780at 1866.444 kb on + strand, within ABZR87_RS08780at 1866.652 kb on + strand, within ABZR87_RS08780at 1866.653 kb on - strand, within ABZR87_RS08780at 1866.653 kb on - strand, within ABZR87_RS08780at 1866.653 kb on - strand, within ABZR87_RS08780at 1866.653 kb on - strand, within ABZR87_RS08780at 1866.653 kb on - strand, within ABZR87_RS08780at 1866.653 kb on - strand, within ABZR87_RS08780at 1866.653 kb on - strand, within ABZR87_RS08780at 1866.653 kb on - strand, within ABZR87_RS08780at 1866.653 kb on - strand, within ABZR87_RS08780at 1866.655 kb on + strand, within ABZR87_RS08780at 1866.656 kb on - strand, within ABZR87_RS08780at 1866.656 kb on - strand, within ABZR87_RS08780at 1866.656 kb on - strand, within ABZR87_RS08780at 1866.656 kb on - strand, within ABZR87_RS08780at 1866.656 kb on - strand, within ABZR87_RS08780at 1866.656 kb on - strand, within ABZR87_RS08780at 1866.877 kb on + strand, within ABZR87_RS08780at 1866.877 kb on + strand, within ABZR87_RS08780at 1866.878 kb on - strand, within ABZR87_RS08780at 1866.878 kb on - strand, within ABZR87_RS08780at 1866.878 kb on - strand, within ABZR87_RS08780at 1866.878 kb on - strand, within ABZR87_RS08780at 1866.878 kb on - strand, within ABZR87_RS08780at 1866.883 kb on + strand, within ABZR87_RS08780at 1866.884 kb on - strand, within ABZR87_RS08780at 1866.884 kb on - strand, within ABZR87_RS08780at 1866.943 kb on + strand, within ABZR87_RS08780at 1867.058 kb on + strandat 1867.097 kb on - strandat 1867.097 kb on - strandat 1867.115 kb on + strandat 1867.116 kb on - strandat 1867.121 kb on - strandat 1867.361 kb on + strand, within ABZR87_RS08785at 1867.361 kb on + strand, within ABZR87_RS08785at 1867.362 kb on - strand, within ABZR87_RS08785at 1867.626 kb on + strand, within ABZR87_RS08790at 1867.626 kb on + strand, within ABZR87_RS08790at 1867.626 kb on + strand, within ABZR87_RS08790at 1867.627 kb on - strand, within ABZR87_RS08790at 1867.842 kb on + strand, within ABZR87_RS08790at 1867.842 kb on + strand, within ABZR87_RS08790at 1867.842 kb on + strand, within ABZR87_RS08790at 1867.842 kb on + strand, within ABZR87_RS08790at 1867.843 kb on - strand, within ABZR87_RS08790at 1867.843 kb on - strand, within ABZR87_RS08790at 1867.843 kb on - strand, within ABZR87_RS08790at 1867.843 kb on - strand, within ABZR87_RS08790at 1867.843 kb on - strand, within ABZR87_RS08790at 1867.977 kb on + strand, within ABZR87_RS08790at 1867.978 kb on - strand, within ABZR87_RS08790at 1867.986 kb on + strand, within ABZR87_RS08790at 1867.986 kb on + strand, within ABZR87_RS08790at 1867.986 kb on + strand, within ABZR87_RS08790at 1867.986 kb on + strand, within ABZR87_RS08790at 1867.986 kb on + strand, within ABZR87_RS08790at 1867.986 kb on + strand, within ABZR87_RS08790at 1867.987 kb on - strand, within ABZR87_RS08790at 1867.987 kb on - strand, within ABZR87_RS08790at 1867.987 kb on - strand, within ABZR87_RS08790at 1867.987 kb on - strand, within ABZR87_RS08790at 1868.030 kb on - strand, within ABZR87_RS08790at 1868.030 kb on - strand, within ABZR87_RS08790at 1868.030 kb on - strand, within ABZR87_RS08790at 1868.039 kb on + strandat 1868.137 kb on + strandat 1868.137 kb on + strandat 1868.137 kb on + strandat 1868.138 kb on - strandat 1868.138 kb on - strandat 1868.138 kb on - strandat 1868.220 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB
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1,866,276 + -0.0
1,866,276 + +0.2
1,866,277 - +0.7
1,866,277 - -0.5
1,866,277 - -2.5
1,866,277 - -1.2
1,866,444 + ABZR87_RS08780 0.18 -0.2
1,866,444 + ABZR87_RS08780 0.18 -0.3
1,866,652 + ABZR87_RS08780 0.45 -0.5
1,866,653 - ABZR87_RS08780 0.45 +0.1
1,866,653 - ABZR87_RS08780 0.45 +0.2
1,866,653 - ABZR87_RS08780 0.45 +0.5
1,866,653 - ABZR87_RS08780 0.45 -1.2
1,866,653 - ABZR87_RS08780 0.45 +0.8
1,866,653 - ABZR87_RS08780 0.45 -1.3
1,866,653 - ABZR87_RS08780 0.45 -1.3
1,866,653 - ABZR87_RS08780 0.45 +0.9
1,866,653 - ABZR87_RS08780 0.45 -1.2
1,866,655 + ABZR87_RS08780 0.45 +3.2
1,866,656 - ABZR87_RS08780 0.45 -1.0
1,866,656 - ABZR87_RS08780 0.45 +0.3
1,866,656 - ABZR87_RS08780 0.45 +1.2
1,866,656 - ABZR87_RS08780 0.45 -0.3
1,866,656 - ABZR87_RS08780 0.45 -0.1
1,866,656 - ABZR87_RS08780 0.45 +0.7
1,866,877 + ABZR87_RS08780 0.74 +0.2
1,866,877 + ABZR87_RS08780 0.74 -0.4
1,866,878 - ABZR87_RS08780 0.74 -1.9
1,866,878 - ABZR87_RS08780 0.74 -0.8
1,866,878 - ABZR87_RS08780 0.74 +0.8
1,866,878 - ABZR87_RS08780 0.74 -3.3
1,866,878 - ABZR87_RS08780 0.74 +0.0
1,866,883 + ABZR87_RS08780 0.75 +0.2
1,866,884 - ABZR87_RS08780 0.75 -0.7
1,866,884 - ABZR87_RS08780 0.75 -0.3
1,866,943 + ABZR87_RS08780 0.83 -1.2
1,867,058 + +0.8
1,867,097 - -0.4
1,867,097 - -0.7
1,867,115 + -0.7
1,867,116 - -0.2
1,867,121 - -1.5
1,867,361 + ABZR87_RS08785 0.50 -2.6
1,867,361 + ABZR87_RS08785 0.50 -0.5
1,867,362 - ABZR87_RS08785 0.50 -2.1
1,867,626 + ABZR87_RS08790 0.22 -0.1
1,867,626 + ABZR87_RS08790 0.22 -1.8
1,867,626 + ABZR87_RS08790 0.22 -0.6
1,867,627 - ABZR87_RS08790 0.22 -0.2
1,867,842 + ABZR87_RS08790 0.58 -0.6
1,867,842 + ABZR87_RS08790 0.58 -0.1
1,867,842 + ABZR87_RS08790 0.58 +1.5
1,867,842 + ABZR87_RS08790 0.58 -0.2
1,867,843 - ABZR87_RS08790 0.58 +1.8
1,867,843 - ABZR87_RS08790 0.58 -0.9
1,867,843 - ABZR87_RS08790 0.58 -0.6
1,867,843 - ABZR87_RS08790 0.58 +1.7
1,867,843 - ABZR87_RS08790 0.58 -0.9
1,867,977 + ABZR87_RS08790 0.81 +0.9
1,867,978 - ABZR87_RS08790 0.81 +2.0
1,867,986 + ABZR87_RS08790 0.82 +0.6
1,867,986 + ABZR87_RS08790 0.82 -0.4
1,867,986 + ABZR87_RS08790 0.82 +2.7
1,867,986 + ABZR87_RS08790 0.82 -0.6
1,867,986 + ABZR87_RS08790 0.82 -2.0
1,867,986 + ABZR87_RS08790 0.82 +0.2
1,867,987 - ABZR87_RS08790 0.82 +0.7
1,867,987 - ABZR87_RS08790 0.82 +1.5
1,867,987 - ABZR87_RS08790 0.82 -1.7
1,867,987 - ABZR87_RS08790 0.82 +0.6
1,868,030 - ABZR87_RS08790 0.90 +0.1
1,868,030 - ABZR87_RS08790 0.90 +1.2
1,868,030 - ABZR87_RS08790 0.90 +0.5
1,868,039 + +0.1
1,868,137 + -0.4
1,868,137 + +0.1
1,868,137 + +0.2
1,868,138 - -1.7
1,868,138 - -0.5
1,868,138 - -3.5
1,868,220 + +0.0

Or see this region's nucleotide sequence