Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08675

Experiment: soil EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08670 and ABZR87_RS08675 are separated by 48 nucleotidesABZR87_RS08675 and ABZR87_RS08680 overlap by 4 nucleotides ABZR87_RS08670: ABZR87_RS08670 - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 1,841,779 to 1,842,900 _RS08670 ABZR87_RS08675: ABZR87_RS08675 - O-antigen translocase, at 1,842,949 to 1,844,196 _RS08675 ABZR87_RS08680: ABZR87_RS08680 - glycosyltransferase, at 1,844,193 to 1,845,440 _RS08680 Position (kb) 1842 1843 1844 1845Strain fitness (log2 ratio) -1 0 1 2 3 4at 1841.981 kb on + strand, within ABZR87_RS08670at 1842.001 kb on - strand, within ABZR87_RS08670at 1842.119 kb on + strand, within ABZR87_RS08670at 1842.161 kb on - strand, within ABZR87_RS08670at 1842.180 kb on + strand, within ABZR87_RS08670at 1842.181 kb on - strand, within ABZR87_RS08670at 1842.184 kb on + strand, within ABZR87_RS08670at 1842.187 kb on - strand, within ABZR87_RS08670at 1842.198 kb on + strand, within ABZR87_RS08670at 1842.257 kb on - strand, within ABZR87_RS08670at 1842.259 kb on + strand, within ABZR87_RS08670at 1842.259 kb on + strand, within ABZR87_RS08670at 1842.259 kb on + strand, within ABZR87_RS08670at 1842.260 kb on - strand, within ABZR87_RS08670at 1842.260 kb on - strand, within ABZR87_RS08670at 1842.260 kb on - strand, within ABZR87_RS08670at 1842.260 kb on - strand, within ABZR87_RS08670at 1842.282 kb on + strand, within ABZR87_RS08670at 1842.282 kb on + strand, within ABZR87_RS08670at 1842.282 kb on + strand, within ABZR87_RS08670at 1842.283 kb on - strand, within ABZR87_RS08670at 1842.283 kb on - strand, within ABZR87_RS08670at 1842.284 kb on + strand, within ABZR87_RS08670at 1842.327 kb on + strand, within ABZR87_RS08670at 1842.327 kb on + strand, within ABZR87_RS08670at 1842.328 kb on - strand, within ABZR87_RS08670at 1842.329 kb on + strand, within ABZR87_RS08670at 1842.329 kb on + strand, within ABZR87_RS08670at 1842.351 kb on + strand, within ABZR87_RS08670at 1842.352 kb on - strand, within ABZR87_RS08670at 1842.445 kb on + strand, within ABZR87_RS08670at 1842.445 kb on + strand, within ABZR87_RS08670at 1842.445 kb on + strand, within ABZR87_RS08670at 1842.445 kb on + strand, within ABZR87_RS08670at 1842.445 kb on + strand, within ABZR87_RS08670at 1842.445 kb on + strand, within ABZR87_RS08670at 1842.445 kb on + strand, within ABZR87_RS08670at 1842.445 kb on + strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.446 kb on - strand, within ABZR87_RS08670at 1842.499 kb on + strand, within ABZR87_RS08670at 1842.499 kb on + strand, within ABZR87_RS08670at 1842.500 kb on - strand, within ABZR87_RS08670at 1842.500 kb on - strand, within ABZR87_RS08670at 1842.552 kb on + strand, within ABZR87_RS08670at 1842.566 kb on - strand, within ABZR87_RS08670at 1842.566 kb on - strand, within ABZR87_RS08670at 1842.566 kb on - strand, within ABZR87_RS08670at 1842.628 kb on + strand, within ABZR87_RS08670at 1842.629 kb on - strand, within ABZR87_RS08670at 1842.648 kb on + strand, within ABZR87_RS08670at 1842.656 kb on - strand, within ABZR87_RS08670at 1842.662 kb on + strand, within ABZR87_RS08670at 1842.737 kb on - strand, within ABZR87_RS08670at 1842.760 kb on + strand, within ABZR87_RS08670at 1842.760 kb on + strand, within ABZR87_RS08670at 1842.761 kb on - strand, within ABZR87_RS08670at 1842.761 kb on - strand, within ABZR87_RS08670at 1842.838 kb on + strandat 1842.839 kb on - strandat 1842.855 kb on + strandat 1842.856 kb on - strandat 1842.856 kb on - strandat 1842.918 kb on + strandat 1842.918 kb on + strandat 1842.918 kb on + strandat 1842.918 kb on + strandat 1842.933 kb on + strandat 1844.190 kb on + strandat 1844.191 kb on - strandat 1844.191 kb on - strandat 1844.282 kb on + strandat 1844.293 kb on + strandat 1844.403 kb on + strand, within ABZR87_RS08680at 1844.403 kb on + strand, within ABZR87_RS08680at 1844.499 kb on - strand, within ABZR87_RS08680at 1844.528 kb on + strand, within ABZR87_RS08680at 1844.534 kb on + strand, within ABZR87_RS08680at 1844.535 kb on - strand, within ABZR87_RS08680at 1844.535 kb on - strand, within ABZR87_RS08680at 1844.595 kb on + strand, within ABZR87_RS08680at 1844.783 kb on + strand, within ABZR87_RS08680at 1844.783 kb on + strand, within ABZR87_RS08680at 1844.784 kb on - strand, within ABZR87_RS08680at 1844.804 kb on - strand, within ABZR87_RS08680at 1844.821 kb on - strand, within ABZR87_RS08680at 1844.889 kb on + strand, within ABZR87_RS08680at 1844.889 kb on - strand, within ABZR87_RS08680at 1844.917 kb on + strand, within ABZR87_RS08680at 1844.918 kb on - strand, within ABZR87_RS08680at 1844.926 kb on - strand, within ABZR87_RS08680at 1844.929 kb on + strand, within ABZR87_RS08680at 1844.930 kb on - strand, within ABZR87_RS08680at 1845.000 kb on - strand, within ABZR87_RS08680at 1845.000 kb on - strand, within ABZR87_RS08680at 1845.108 kb on + strand, within ABZR87_RS08680at 1845.109 kb on - strand, within ABZR87_RS08680at 1845.115 kb on + strand, within ABZR87_RS08680at 1845.115 kb on + strand, within ABZR87_RS08680at 1845.116 kb on - strand, within ABZR87_RS08680at 1845.116 kb on - strand, within ABZR87_RS08680at 1845.116 kb on - strand, within ABZR87_RS08680at 1845.141 kb on + strand, within ABZR87_RS08680at 1845.141 kb on + strand, within ABZR87_RS08680at 1845.142 kb on - strand, within ABZR87_RS08680at 1845.142 kb on - strand, within ABZR87_RS08680at 1845.142 kb on - strand, within ABZR87_RS08680at 1845.172 kb on + strand, within ABZR87_RS08680at 1845.173 kb on - strand, within ABZR87_RS08680at 1845.173 kb on - strand, within ABZR87_RS08680at 1845.173 kb on - strand, within ABZR87_RS08680at 1845.173 kb on - strand, within ABZR87_RS08680at 1845.173 kb on - strand, within ABZR87_RS08680at 1845.175 kb on - strand, within ABZR87_RS08680

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Per-strain Table

Position Strand Gene LocusTag Fraction soil EcoFAB sample 2; outgrowth in LB
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1,841,981 + ABZR87_RS08670 0.18 +2.3
1,842,001 - ABZR87_RS08670 0.20 +3.0
1,842,119 + ABZR87_RS08670 0.30 +2.3
1,842,161 - ABZR87_RS08670 0.34 +3.9
1,842,180 + ABZR87_RS08670 0.36 +2.5
1,842,181 - ABZR87_RS08670 0.36 +2.0
1,842,184 + ABZR87_RS08670 0.36 +2.0
1,842,187 - ABZR87_RS08670 0.36 +4.3
1,842,198 + ABZR87_RS08670 0.37 +1.7
1,842,257 - ABZR87_RS08670 0.43 +2.0
1,842,259 + ABZR87_RS08670 0.43 +3.0
1,842,259 + ABZR87_RS08670 0.43 +3.9
1,842,259 + ABZR87_RS08670 0.43 +4.6
1,842,260 - ABZR87_RS08670 0.43 +2.3
1,842,260 - ABZR87_RS08670 0.43 +3.4
1,842,260 - ABZR87_RS08670 0.43 +3.1
1,842,260 - ABZR87_RS08670 0.43 +3.8
1,842,282 + ABZR87_RS08670 0.45 +3.0
1,842,282 + ABZR87_RS08670 0.45 +2.2
1,842,282 + ABZR87_RS08670 0.45 +0.7
1,842,283 - ABZR87_RS08670 0.45 +2.1
1,842,283 - ABZR87_RS08670 0.45 -0.3
1,842,284 + ABZR87_RS08670 0.45 +3.0
1,842,327 + ABZR87_RS08670 0.49 +2.2
1,842,327 + ABZR87_RS08670 0.49 +2.7
1,842,328 - ABZR87_RS08670 0.49 +3.1
1,842,329 + ABZR87_RS08670 0.49 +2.3
1,842,329 + ABZR87_RS08670 0.49 +2.1
1,842,351 + ABZR87_RS08670 0.51 +1.9
1,842,352 - ABZR87_RS08670 0.51 +3.5
1,842,445 + ABZR87_RS08670 0.59 +0.4
1,842,445 + ABZR87_RS08670 0.59 +4.4
1,842,445 + ABZR87_RS08670 0.59 +0.2
1,842,445 + ABZR87_RS08670 0.59 +3.8
1,842,445 + ABZR87_RS08670 0.59 +2.6
1,842,445 + ABZR87_RS08670 0.59 +2.4
1,842,445 + ABZR87_RS08670 0.59 +2.6
1,842,445 + ABZR87_RS08670 0.59 +2.8
1,842,446 - ABZR87_RS08670 0.59 +2.0
1,842,446 - ABZR87_RS08670 0.59 +1.5
1,842,446 - ABZR87_RS08670 0.59 +2.4
1,842,446 - ABZR87_RS08670 0.59 +2.6
1,842,446 - ABZR87_RS08670 0.59 +2.5
1,842,446 - ABZR87_RS08670 0.59 +3.8
1,842,446 - ABZR87_RS08670 0.59 +2.8
1,842,446 - ABZR87_RS08670 0.59 +2.4
1,842,446 - ABZR87_RS08670 0.59 -1.5
1,842,446 - ABZR87_RS08670 0.59 -0.3
1,842,446 - ABZR87_RS08670 0.59 +3.4
1,842,446 - ABZR87_RS08670 0.59 +3.3
1,842,499 + ABZR87_RS08670 0.64 +1.2
1,842,499 + ABZR87_RS08670 0.64 +1.7
1,842,500 - ABZR87_RS08670 0.64 +4.3
1,842,500 - ABZR87_RS08670 0.64 +4.0
1,842,552 + ABZR87_RS08670 0.69 +2.2
1,842,566 - ABZR87_RS08670 0.70 +2.5
1,842,566 - ABZR87_RS08670 0.70 +3.1
1,842,566 - ABZR87_RS08670 0.70 +0.6
1,842,628 + ABZR87_RS08670 0.76 +1.5
1,842,629 - ABZR87_RS08670 0.76 +3.8
1,842,648 + ABZR87_RS08670 0.77 +2.5
1,842,656 - ABZR87_RS08670 0.78 +2.9
1,842,662 + ABZR87_RS08670 0.79 +1.4
1,842,737 - ABZR87_RS08670 0.85 +3.1
1,842,760 + ABZR87_RS08670 0.87 +1.7
1,842,760 + ABZR87_RS08670 0.87 +1.9
1,842,761 - ABZR87_RS08670 0.88 +2.0
1,842,761 - ABZR87_RS08670 0.88 +2.0
1,842,838 + +2.1
1,842,839 - -0.1
1,842,855 + +2.6
1,842,856 - +3.0
1,842,856 - +0.9
1,842,918 + +0.9
1,842,918 + -0.3
1,842,918 + -0.9
1,842,918 + +1.6
1,842,933 + +1.8
1,844,190 + -0.4
1,844,191 - +3.6
1,844,191 - +2.2
1,844,282 + +2.8
1,844,293 + +2.5
1,844,403 + ABZR87_RS08680 0.17 +2.6
1,844,403 + ABZR87_RS08680 0.17 +2.3
1,844,499 - ABZR87_RS08680 0.25 +2.5
1,844,528 + ABZR87_RS08680 0.27 +2.9
1,844,534 + ABZR87_RS08680 0.27 +3.3
1,844,535 - ABZR87_RS08680 0.27 +2.9
1,844,535 - ABZR87_RS08680 0.27 +3.4
1,844,595 + ABZR87_RS08680 0.32 +2.0
1,844,783 + ABZR87_RS08680 0.47 +1.9
1,844,783 + ABZR87_RS08680 0.47 +2.5
1,844,784 - ABZR87_RS08680 0.47 +3.5
1,844,804 - ABZR87_RS08680 0.49 +3.6
1,844,821 - ABZR87_RS08680 0.50 +3.0
1,844,889 + ABZR87_RS08680 0.56 +2.0
1,844,889 - ABZR87_RS08680 0.56 +2.4
1,844,917 + ABZR87_RS08680 0.58 +2.2
1,844,918 - ABZR87_RS08680 0.58 +3.7
1,844,926 - ABZR87_RS08680 0.59 +4.4
1,844,929 + ABZR87_RS08680 0.59 +4.1
1,844,930 - ABZR87_RS08680 0.59 +3.0
1,845,000 - ABZR87_RS08680 0.65 +4.0
1,845,000 - ABZR87_RS08680 0.65 +3.4
1,845,108 + ABZR87_RS08680 0.73 +0.3
1,845,109 - ABZR87_RS08680 0.73 +3.4
1,845,115 + ABZR87_RS08680 0.74 +2.1
1,845,115 + ABZR87_RS08680 0.74 +2.4
1,845,116 - ABZR87_RS08680 0.74 +2.5
1,845,116 - ABZR87_RS08680 0.74 +3.6
1,845,116 - ABZR87_RS08680 0.74 +3.7
1,845,141 + ABZR87_RS08680 0.76 +1.6
1,845,141 + ABZR87_RS08680 0.76 +1.7
1,845,142 - ABZR87_RS08680 0.76 +4.2
1,845,142 - ABZR87_RS08680 0.76 +3.1
1,845,142 - ABZR87_RS08680 0.76 +3.5
1,845,172 + ABZR87_RS08680 0.78 +1.7
1,845,173 - ABZR87_RS08680 0.79 +3.0
1,845,173 - ABZR87_RS08680 0.79 +3.1
1,845,173 - ABZR87_RS08680 0.79 +3.4
1,845,173 - ABZR87_RS08680 0.79 +3.3
1,845,173 - ABZR87_RS08680 0.79 +2.0
1,845,175 - ABZR87_RS08680 0.79 +3.1

Or see this region's nucleotide sequence